result

Gene information

Detail information of g71492

Location

Gene	Chr	Start	End	Strand
g71492	Scaffold_34210:HRSCAF_336209	1565	4321	-

Sequences

CDS

>g71492.t1
ATGACCAACTACAGCCTGCGCGCACGCATGATGATTCTGATCCTGGCACCGACCGTCCTTATTGGTTTATTGCTGAGTATCTTTTTCGTCGTGCATCGCTATAACGACTTGCAGCGTCAACTGGAAGATGCCGGTGCCAGCATTATTGAGCCGCTTGCAGTTTCTACTGAATATGGCATGAGCCTGCAAAATCGCGAATCTATCGGTCAGTTAATAAGCGTACTGCATCGTCGCCATTCCGATATTGTTCGCGCGATTTCGGTTTATGATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTCCTCGCCAGCTCACTGTCACTCGTGACGGCGATATTATGATCCTCCGCACGCCGATTATTTCTGAGAGTTACTCCCCCGACGAATCGCCCAGTAGCGATGCCAAAAATAGTCAAAATATGTTGGGATATATTGCGCTTGAGCTGGATCTTAAATCGGTTCGCTTGCAGCAATATAAAGAGATCTTTATTTCCAGCGTGATGATGCTGTTTTGTATCGGTATTGCGCTTATTTTTGGCTGGCGCTTAATGCGCGATGTAACCGGTCCGATTCGCAACATGGTGAATACCGTCGACCGCATCCGTCGCGGGCAACTCGACAGCCGGGTGGAAGGATTTATGCTTGGTGAGCTGGATATGCTGAAAAACGGTATCAACTCGATGGCAATGTCGCTGGCTGCTTATCACGAAGAGATGCAGCACAATATCGACCAGGCGACGTCCGATCTGCGTGAAACGCTGGAGCAGATGGAAATTCAGAACGTTGAGTTGGATCTGGCGAAAAAGCGCGCCCAGGAAGCGGCGCGTATTAAATCCGAGTTTCTGGCAAATATGTCACACGAGCTGCGTACACCACTGAATGGTGTTATTGGCTTTACCCGCCTGACGCTGAAAACAGAATTAACACCAACGCAGCGCGATCACCTGAATACGATTGAACGTTCGGCAAATAATTTGCTGGCAATTATTAATGATGTTCTCGACTTCTCGAAACTGGAAGCAGGTAAGCTGATTCTGGAAAGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACATTCTTCTCACGATAAAGGGTTGGAACTGACGCTCAATATTAAAAGCGACGTGCCTGATAACGTGATCGGCGACCCACTGCGATTACAGCAAATCATCACTAACCTGGTGGGGAATCCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTGAAGTGCAGATTCGGGATACCGGCATTGGTATTCCTGAACGCGATCAATCGCGCTTATTCCAGGCCTTCCGACAGGCTGATGCCAGTATTTCCCGCCGTCATGGTGGCACCGGGCTGGGGCTGGTGATTACACAAAAACTGGTTAATGAAATGGGCGGCGATATTTCGTTCCATAGCCAGCCGAATCGCGGTTCAACTTTCTGGTTCCACATTAATCTCGATCTGAACCCGAACATTATTATCGAAGGGCCATCCACCCAGTGCCTCGCAGGTAAGCGCCTGGCCTATGTCGAACCAAACTCCGCAGCAGCGCAATGCACGCTGGATATTTTAAGTGAAACGCCGCTGGAAGTGGTTTATAGCCCAACGTTCTCCGCGCTGCCTCCCGCGCATTACGACATGATGTTGTTAGGCATCGCGGTGACCTTCCGCGAGCCGCTAACAATGCAACATGAGCGATTAGCGAAAGCGGTATCGATGACCGATTTCCTGATGCTGGCACTTCCTTGCCATGCACAAGTCAATGCTGAAAAACTCAAGCAAGATGGTATCGGCGCGTGTCTGCTGAAACCATTAACACCTACGCGCCTGCTGCCTGCCCTGACGGAATTTTGTCATCACAAACAAAACACGCTTTTGCCTGTAACCGATGAAAGTAAGCTGGCAATGACAGTCATGGCGGTTGATGACAACCCCGCTAACCTGAAACTTATCGGCGCATTGCTGGAAGATATGGTGCAACATGTGGAACTTTGCGATAGCGGGCATCAGGCGGTTGAACGGGCGAAACAGATGCCGTTCGATTTGATCTTAATGGATATTCAAATGCCTGACATGGATGGCATTCGGGCCTGCGAGCTCATCCACCAGCTTCCCCATCAGCAACAAACGCCGGTTATCGCGGTAACGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGGATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGCCTGGCAGCGGTATTTCGTCTCGCGTCGTGACGCCCGAAGTCAACGAAATTGTGGTGAACCCGAATGCGACCCTCGACTGGCAACTGGCACTACGCCAGGCAGCAGGAAAAACCGATTTAGCGCGCGATATGCTGCAAATGTTACTCGATTTCCTGCCTGAAGTTCGCAACAAAGTTGAGGAACAGCTGGTTGGAGAAAACCCGGAAGGCCTGGTTGATTTGATTCATAAACTGCATGGCAGTTGCGGCTATAGCGGTGTGCCGCGTATGAAGAATCTCTGCCAACTGATCGAACAACAGCTACGTAGCGGTACTAAAGAAGAAGATTTGGAGCCGGAGCTGCTGGAACTGTTGGACGAGATGGATAATGTCGCGCGCGAAGCCAGCAAAATTCTCGGGTAA

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	WP_000186450.1	0.0e+00	MULTISPECIES: two-component sensor histidine kinase BarA
Swissprot	P0AEC5.1	0.0e+00	Signal transduction histidine-protein kinase BarA
trEMBL	A0A077ZIK0	0.0e+00	histidine kinase

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G01830.1	32.75	2e-67	254	AHK4;ATCRE1;CRE1;WOL;WOL1	CHASE domain containing histidine kinase protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g71492	AT2G01830.1	632	303	19	272	786	424	1050	32.75	2e-67	254
g71492	AT2G01830.3	632	303	19	272	786	424	1050	32.75	2e-67	254
g71492	AT2G01830.2	632	303	19	272	786	447	1073	32.75	3e-67	254

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF09984.6	DUF2222	Family	31	177	185.1	6e-55
PF00672.22	HAMP	Family	181	248	44.4	1.4e-11
PF00512.22	HisKA	Domain	293	357	72.3	2.2e-20
PF02518.23	HATPase_c	Domain	404	519	99.7	1.2e-28
PF00072.21	Response_reg	Domain	670	780	101.1	3.4e-29
PF01627.20	Hpt	Family	828	908	47.7	1.3e-12

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0000155	F	phosphorelay sensor kinase activity
GO:0000160	P	phosphorelay signal transduction system
GO:0005575	C	cellular_component
GO:0000302	P	response to reactive oxygen species
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0016020	C	membrane
GO:0003824	F	catalytic activity
GO:0004672	F	protein kinase activity
GO:0004673	F	protein histidine kinase activity
GO:0007165	P	signal transduction
GO:0035556	P	intracellular signal transduction
GO:0005623	C	cell
GO:0006464	P	cellular protein modification process
GO:0006468	P	protein phosphorylation
GO:0006793	P	phosphorus metabolic process
GO:0006796	P	phosphate-containing compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0006950	P	response to stress
GO:0006979	P	response to oxidative stress
GO:0007154	P	cell communication
GO:0008150	P	biological_process
GO:0042493	P	response to drug
GO:0009636	P	response to toxic substance
GO:0009927	F	histidine phosphotransfer kinase activity
GO:0009987	P	cellular process
GO:0010033	P	response to organic substance
GO:0010035	P	response to inorganic substance
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016740	F	transferase activity
GO:0016772	F	transferase activity, transferring phosphorus-containing groups
GO:0016773	F	phosphotransferase activity, alcohol group as acceptor
GO:0016775	F	phosphotransferase activity, nitrogenous group as acceptor
GO:0046677	P	response to antibiotic
GO:0018106	P	peptidyl-histidine phosphorylation
GO:0018193	P	peptidyl-amino acid modification
GO:0018202	P	peptidyl-histidine modification
GO:0019538	P	protein metabolic process
GO:0023014	P	signal transduction by protein phosphorylation
GO:0023052	P	signaling
GO:0070887	P	cellular response to chemical stimulus
GO:0036211	P	protein modification process
GO:0042221	P	response to chemical
GO:0042542	P	response to hydrogen peroxide
GO:0043170	P	macromolecule metabolic process
GO:0043412	P	macromolecule modification
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044464	C	cell part
GO:0046777	P	protein autophosphorylation
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051716	P	cellular response to stimulus
GO:0060089	F	molecular transducer activity
GO:0065007	P	biological regulation
GO:0071310	P	cellular response to organic substance
GO:0071704	P	organic substance metabolic process
GO:0071944	C	cell periphery
GO:1901564	P	organonitrogen compound metabolic process
GO:1901700	P	response to oxygen-containing compound
GO:0140096

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K07678	barA, gacS, varS; two-component system, NarL family, sensor histidine kinase BarA	EC:2.7.13.3	Two-component system	ko02020
			Biofilm formation - Vibrio cholerae	ko05111
			Biofilm formation - Pseudomonas aeruginosa	ko02025
			Biofilm formation - Escherichia coli	ko02026

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network