result

Gene information

Detail information of g74534

Location

Gene	Chr	Start	End	Strand
g74534	CHR1	92939667	92941370	-

Sequences

CDS

>g74534.t1
ATGGCTACTCCATCAAATCCTTCCAACAAATCCAAGGGAAAATCCGCCATAATCACCAACTCAACCTTCTCCACCGTCGACATGACCTGCGGCATCTGCCTCTCAGACGTCGGCCAGTCGATCCGCGGCCAGATCGACAGCTGTGACCACTACTTCTGCTTCATATGCATCATGGAGTGGTCCAAAGTCGAGACCCGATGCCCGATCTGCAAGCAGCGGTTTAGATCCATCCGAAGACCCACCGGCACCAACTTCGCCCACGAACGCGTCGTCGATCTGCCAGAGCGTAATCAGGTGTACAGCTACCTCGGCAATCAGAGCGCTACGGTTTCCGATCCATACGCGGAAATTAAATGCGGCGTTTGTTCGAATCGAAGCGACGAAGAGTTTTTATTGCTTTGCGATCTTTGCGATTCTGCTTGGCATACTTATTGTGTTGGTCTTGGTGCTGTTGTGCCTGAAGGCGACTGGTACTGCTCCGATTGTGCCCTAATTAGAACTCAGCATTCCATGTTTGAATCGTTATCTGTCGGTTGCAATCGTGATTCGTATGATCGCCTTAGGTCGGTTAGATCTTCTCAGGCGAGTACAAGTAGTTTCGAAACTGAAATTCAGATTAGAGGAGAGAATTATGTAAGGACTTTAGGTATATTTAGAAATTTGCAGGATAGGATTCAGCAGATTAGGGAAAATTGGAATTCCATTCAGTCCGGTTCATTGGGTTTCCCATTAAATTCTAATTTGGAGGATACCAATATTGGAAGGAAAAATTGTGAATATTCTATGGTTTCTGATGATTTAGATCAAGAAGAAGCTGCTAGAAATGCAAAACAAAATGAAACGAGACGTAGTGATGTGAAGAAAGCCTGGAAGATGTTTGGGAAGGTGAAATCAAGAGAAGGGAGTCAAAATTTACAAAAACATTCCAAATTGGACAATGCATGTATGGACGTAAGCAGTGTATCTATGAATATAAGCAATAATTGCAAAGCTATTAAAAAGCCTAGTGCGAATCCAGTTCGTGAGCATACCAGTTTTTATGCATGCAGAGGTGAAAAGAGCGAACATGTCCACAATCTACAAGAATGTGATATAACTGGAAAGTTAACAAAATTTTCAGAATCAAGAAATGCACCTATGGATATAAGTAATCATTGCAAAGCTAGTACAAAGCATAGTGTAAGTCCAATTGGTGAACATATTACTTTTCCTGGGCGCACAGAGAAAACAAGTAAACATGCCAACGATGTACATGCACATGAATGTGATATTTACAGAAAGAAATTTAATCGAATCAATAATATGACTGAAAAATTGATCAGGCATAAAGAAATAAATGCAGGAAGCGGTCGAAGTTCTAACAAAAGTTACAGCACAAGGAAGGAAGGTAGAAGCTGCAGCATCAAAGATGAAGTTCGATCATTTGTGAAGCTCAATCTGAAGTTAGAAAGTAAAGGCCAGAAAATGAATTCCAATAAATTCAGGGAAATTGCTAGAGCATCTACACACACTATCTTGGCAGCCTGTGGCATTGAACATTCAAAATCTTGTGCAAGGAGAGTCTTTATGCCAAAATGCAAGCACTATGGACAATGTGGAGAGCAAAGTAAGTATAGTTTGATGTCTAATTCTTGCCGTAAATGCTTTTTTTCGTTTGTGAAACATGTTGTTAGCACTATTTCGCTAGAAATGCATGGACAATAA

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020264405.1	2.8e-99	LOW QUALITY PROTEIN: PHD and RING finger domain-containing protein C126.07c-like
Swissprot	Q63625.2	1.3e-13	CTD-binding SR-like protein rA9
trEMBL	A0A6I9SHC3	5.3e-84	uncharacterized protein LOC105061080 isoform X1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G05670.1	48.15	3e-41	166		RING/U-box protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g74534	AT3G05670.1	162	75	4	6	162	392	549	48.15	3e-41	166
g74534	AT3G05670.1	91	48	2	476	560	779	869	40.66	1e-06	51.6
g74534	AT3G01460.1	55	32	1	113	166	1284	1338	40.00	8e-09	59.3

Ortholog group

Species	Genes
Allium cepa	g74534.t1
Allium fistulosum	AfisC1G05817
Allium sativum	Asa7G03576.1
Arabidopsis thaliana
Oryza sativa	LOC_Os06g17280.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF13639.3	zf-RING_2	Domain	29	71	33.8	2.7e-08
PF00628.26	PHD	Domain	119	163	35.5	6.3e-09

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0006366	P	transcription from RNA polymerase II promoter
GO:0005488	F	binding
GO:0006139	P	nucleobase-containing compound metabolic process
GO:0006351	P	transcription, DNA-templated
GO:0006396	P	RNA processing
GO:0006397	P	mRNA processing
GO:0006725	P	cellular aromatic compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0008150	P	biological_process
GO:0009058	P	biosynthetic process
GO:0009059	P	macromolecule biosynthetic process
GO:0009987	P	cellular process
GO:0010467	P	gene expression
GO:0016070	P	RNA metabolic process
GO:0016071	P	mRNA metabolic process
GO:0019899	F	enzyme binding
GO:0018130	P	heterocycle biosynthetic process
GO:0019438	P	aromatic compound biosynthetic process
GO:0019904	F	protein domain specific binding
GO:0032774	P	RNA biosynthetic process
GO:0034641	P	cellular nitrogen compound metabolic process
GO:0034645	P	cellular macromolecule biosynthetic process
GO:0034654	P	nucleobase-containing compound biosynthetic process
GO:0043170	P	macromolecule metabolic process
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044249	P	cellular biosynthetic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044271	P	cellular nitrogen compound biosynthetic process
GO:0046483	P	heterocycle metabolic process
GO:0070063	F	RNA polymerase binding
GO:0071704	P	organic substance metabolic process
GO:0090304	P	nucleic acid metabolic process
GO:0097659	P	nucleic acid-templated transcription
GO:1901360	P	organic cyclic compound metabolic process
GO:1901362	P	organic cyclic compound biosynthetic process
GO:1901576	P	organic substance biosynthetic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K17586	PHRF1; PHD and RING finger domain-containing protein 1	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network