result

Gene information

Detail information of g76527


Location
GeneChrStartEndStrand
g76527CHR33377297133791216-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020242367.10.0e+00CHD3-type chromatin-remodeling factor PICKLE
SwissprotQ9S775.11.8e-289Protein GYMNOS
trEMBLA0A8K0HU290.0e+00CHD3-type chromatin-remodeling factor PICKLE

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT2G25170.171.660.01045CHD3;CHR6;CKH2;EPP1;GYM;PKL;SSL2chromatin remodeling factor CHD3 (PICKLE)

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Ortholog group
SpeciesGenes
Allium cepag511430.t1; g76527.t1
Allium fistulosumAfisC3G07874; AfisC4G07232
Allium sativumAsa2G06514.1; Asa5G06022.1
Arabidopsis thalianaAT2G25170.1
Oryza sativaLOC_Os06g08480.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00385.21ChromoDomain206755.05e-15
PF00176.20SNF2_NFamily134408217.22.3e-64
PF00271.28Helicase_CFamily43454766.12.8e-18
PF06465.10DUF1087Domain67171965.23.6e-18

Gene Ontology
AccessionOntologyName
GO:0051276Pchromosome organization
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0001101Presponse to acid chemical
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0007165Psignal transduction
GO:0005488Fbinding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0043231Cintracellular membrane-bounded organelle
GO:0006325Pchromatin organization
GO:0006338Pchromatin remodeling
GO:0006355Pregulation of transcription, DNA-templated
GO:0006996Porganelle organization
GO:0007154Pcell communication
GO:0007275Pmulticellular organism development
GO:0008150Pbiological_process
GO:0008283Pcell proliferation
GO:0009719Presponse to endogenous stimulus
GO:0009725Presponse to hormone
GO:0009733Presponse to auxin
GO:0009735Presponse to cytokinin
GO:0009736Pcytokinin-activated signaling pathway
GO:0009739Presponse to gibberellin
GO:0009755Phormone-mediated signaling pathway
GO:0009787Pregulation of abscisic acid-activated signaling pathway
GO:0009788Pnegative regulation of abscisic acid-activated signaling pathway
GO:0009889Pregulation of biosynthetic process
GO:0009890Pnegative regulation of biosynthetic process
GO:0009892Pnegative regulation of metabolic process
GO:0009966Pregulation of signal transduction
GO:0009968Pnegative regulation of signal transduction
GO:0009987Pcellular process
GO:0010033Presponse to organic substance
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010558Pnegative regulation of macromolecule biosynthetic process
GO:0010605Pnegative regulation of macromolecule metabolic process
GO:0010629Pnegative regulation of gene expression
GO:0010646Pregulation of cell communication
GO:0010648Pnegative regulation of cell communication
GO:0016043Pcellular component organization
GO:0045892Pnegative regulation of transcription, DNA-templated
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0022622Proot system development
GO:0023052Psignaling
GO:0070887Pcellular response to chemical stimulus
GO:0023051Pregulation of signaling
GO:0023057Pnegative regulation of signaling
GO:0031323Pregulation of cellular metabolic process
GO:0031324Pnegative regulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031327Pnegative regulation of cellular biosynthetic process
GO:0032501Pmulticellular organismal process
GO:0032502Pdevelopmental process
GO:0032870Pcellular response to hormone stimulus
GO:0033993Presponse to lipid
GO:0042221Presponse to chemical
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0044424Cintracellular part
GO:0044464Ccell part
GO:0045934Pnegative regulation of nucleobase-containing compound metabolic process
GO:0048364Proot development
GO:0048519Pnegative regulation of biological process
GO:0048523Pnegative regulation of cellular process
GO:0048580Pregulation of post-embryonic development
GO:0048583Pregulation of response to stimulus
GO:0048585Pnegative regulation of response to stimulus
GO:0048731Psystem development
GO:0048856Panatomical structure development
GO:0050789Pregulation of biological process
GO:0050793Pregulation of developmental process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051172Pnegative regulation of nitrogen compound metabolic process
GO:0051239Pregulation of multicellular organismal process
GO:0051252Pregulation of RNA metabolic process
GO:0051253Pnegative regulation of RNA metabolic process
GO:0051716Pcellular response to stimulus
GO:0060255Pregulation of macromolecule metabolic process
GO:0065007Pbiological regulation
GO:0071310Pcellular response to organic substance
GO:0071368Pcellular response to cytokinin stimulus
GO:0071495Pcellular response to endogenous stimulus
GO:0071840Pcellular component organization or biogenesis
GO:0080090Pregulation of primary metabolic process
GO:0097159Forganic cyclic compound binding
GO:0099402Pplant organ development
GO:1901363Fheterocyclic compound binding
GO:1901419Pregulation of response to alcohol
GO:1901420Pnegative regulation of response to alcohol
GO:1901700Presponse to oxygen-containing compound
GO:1902679Pnegative regulation of RNA biosynthetic process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:1903507Pnegative regulation of nucleic acid-templated transcription
GO:2000023Pregulation of lateral root development
GO:2000026Pregulation of multicellular organismal development
GO:2000069Pregulation of post-embryonic root development
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2000113Pnegative regulation of cellular macromolecule biosynthetic process
GO:2000280Pregulation of root development
GO:2001141Pregulation of RNA biosynthetic process
GO:1905957
GO:1905958

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K11642CHD3, MI2A; chromodomain-helicase-DNA-binding protein 3EC:3.6.4.12 --
K11643CHD4, MI2B; chromodomain-helicase-DNA-binding protein 4EC:3.6.4.12 --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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