result

Gene information

Detail information of g78334

Location

Gene	Chr	Start	End	Strand
g78334	Scaffold_35093:HRSCAF_353722	470482	477906	+

Sequences

CDS

Protein

Gene

>g78334.t1
ATGGCGATGATATGGAGAAATTCGCAAGATAAATTGAACAAGGTAAATTTTTTTATATAGTTTGCATTCAACTTTTCTCTCTTTTTAAATCTTATTACTTCAGTTGTTTAAAAAACTGGAGACAAATGCTTCTTTTTTTGCATTATTACATGCATTGTTATATCATGATGATGGTAAATGCAATAAGATGGTAATGTCATAGAAGAAATAAAATCATATAGTGGTATTTATTTGTTTGCCATGGTTTAAACATTCATTTTCGCAAATTATTTCATGTATTCTTCCATGAATTCCTTCATATTATATGCTTGTTTATATTTTGTTTAATTCAAAAAATCTGAACGGTTAAATTATATTTTATTCTTAATTAGAATTTCATACGTTGGATTTTTCAAACATTGGTCATTGTTCCTCGTTTTTTGTTGGGTATCATAATTTTCATTAAATGTCCTTAATGATAATTTATGAGTTTTTATTACAGTGCAATTTTTCTGACATTGATTCAATGAGCATGGCTATCCGAGAGAATAGGGTATTAAATATTATATATATCTAGTATTGTTTTACATAGTCACAAATTTGGTTTATGGTACAAAAGACAACCATATGGATTAACTATGGATCTTTTCAAAGAATTTCATAAATCAAGGAGTGATGATCATGCAACTGCTGGATTACAAAGTTCCCTTTTTTTAAAAACATTGTAACAACCGGTATTTCGTGTCTGTTTATAATCGACATTTAAATGATTAATATTTTCGCTAATTACCAATTGAAGTTTTTAAATTTGAAATTAAAATTTCTTTTCATAAATTTGTTTAAGAATTTTATTGGGCTTTAAAAATCGTTTTGGCCCATTTCTTTTGTTGCCGTGATGGGTAACAAAGCATAATAACCGTCCCCCCCTCTTTACCCTTTTCATTTTCAAAACCCAACCCTAAAATTGAACGAAAGAAAATAAATGGCTGCTCGATTTCTCGTTCGTCCCTCTTCTCCGTTCGTCCCCAAATTGAAACTAGGGCTTCATGGAATCAAATGCGCCGACTTCAACTGCTAGGTCGATCGTTAGTACTCCGATAGCAAAGGTGAGTGATCCCCTCACTCACATCTAATTCAAAAAACTCTAGCGATTTTGAACTTGAGATTTCGTGCTTTCTGACTTGGATCGATTTCTAATTGTTTTGGTTATCACGGTATCGAATTTGAAATGTACGATTCCTTTATTGTTGACTTTGGCTTGTGATGATGTTGATTGGATTATTTTTCGGCAAAAACATTTTTTTTTATCATAGACATGATTTTAGGTTGGCAACCTACTGTTTCTTCACTTATATTATTTTCAACCTGTTGCTTGATATTGGCCATTGTGACTGCGACACTGTCATTGCACTTGGGCATTCATGTGAGGGACTTGTTCGGTTTATACTTGCCTGACCTTATTTGCAAACCTGATTTGGCGAAAATAATTTGAGTTTGGTACTGTCTAGACTTGAGACTGCTGTTTCATGATTTTGAACTCGTTTTGACTCGTTGACCTCGGCATTCCTTCGAATTGTTGCTAGTCGTTGTATATGCCTTGAGTTGACCTTGCCTTTGACCTGTAGCTTGAATATCTTGATGGCACTTCATGTTGTAGATGTTATGTGCAGTGATATCGAACTGCTTCATGTTTCACTGATTTGTTAAAACATGGTATTCTCACTTTCACTTAGCCACTGCGTTTTACTGTGCCTTGCACCTGATTGCTTGGTGGTCTAGATACACGTGATTTTTGTAAAAATTGAATCACTGTCGTATTGACATTGTTTTACTGTTTATATATACACACGTGATAGCCTCGGCCACTTTGATTCTAATTGGAAATTGCTTCTTTGAATTTTCTGTTGCATATAAGTTAGCTGCCTCTGGTCGTCATTGTACGAGGTCACTGCCCTTGTATTATGTTACATGCAGCAGCACCATCTTTTTGTCGACAATATTTGAAACTGTCGCGTGTTTGGATCTTATGAATCTAGTATGACTTGAGTATTGTCCCTGTTTTCACTGCATATGGCTTTGCATCTTCTTTATGTTGCATAGCTTGTCCTTTGGGTTGAGCATTTATGTCTGCAGTCTTCACTGCAATCTTTGTCTACATATCAGGTTGTTTTCATGTTGCACATGAATATGATCATTCATATCTGCTGCATTACTGTTTGAACATTCACTATTTGGTTCATTGTTATAGCTCGACAGTTTTGGGATAATGCACATTGTCACTGTTTGATATAATTTGCGTTTCAGTTGTGCAGTTGCATTTGGGATATATTGGCTTGAGCTCGAGTGCATGTAACATTAGCTTTACCTCTGTCTTTATTTATTGTTTGCATTCTTGTATATGCATTTGTTGAGTTGTTCACTGATGCAATACTTGTTGCCCTTCATTTAAAACCCTGTTGCATTTGGGTTAGTGGCTACATTAAGTTGTTTTCATGTGTGATACTTGTGGTGACTGCAGTATTTGTTGCAGTTTGCCTTTGTATTCATTAGTGACTGCAGTTTCATTTTATATGCAGTTTCGCTTTGTGATTTGCGTCGCATTGATGCAATTGGATTTGTTTTTCCTAATTTCAGTTGAGTTCGGCACTTACGTTGTCGTTGCTCGATCGTTTAGTTTCGAGGCTATTTGTACTTGTGTTGAATCTGATTTTGATTTGACCTTGTGCACTTGAGTTGGCGAGGCAGTGCACATGTATGTACGTGTGTACTGCAGCCACACCGCCTTGATTTCATTGGTATTTGAACCTTCATTGATTTTGGTTCGTTGATCTTTTGGGTACATTCTCGCTATAGTGGCAAGGCAGTGCACGCAGGCGTGAACTGCAGCCACACGGTATGGTTTTGTGATATTCTATTTTGTTTTGATTGATTAATCTTTTGCGTAGTTCATGTGCTGTAGTGGCGAGGCAGTACACGCGTGCGTGTACTGCAGCCCTACTCGTCTTAATATTTTAATTGATATTTCAATGGTTTGAACTATTTCGTTTATTCAATTCAATATTCTGAATTTCATTCTGATTTGGTTGAATTTGCTGACTTGTTGTTTAACACTGCTACGTGTTATATTTATCGTTATCCGATTTCTTTATTCAACTATCGGATAAACGAGATTTATTGTGACTGTCGTCTATTCATTATTTAATTATTATTGCTTCTGTGCACTAATAACTGAGTTTGAATTAGACTGACCCGAGTATTATTTTCTTTTGAATTTAATACTCGGGTCAGACCGAGTATTTACAGGTTGTAGATTTTTAGCTTTGGGTTGCTGCTAGAGCTATGAAGTTCTTTCATATCTTTTGGAGTAGTTGTCGTCATTTGTAGCAGTCTGTAAAATTGTATAGGAAAATATGTATTCATGTATTCATGTATATTATATACGTTAATGTACTTGTATATGTAACTTCCTGAGTCGACTGTTGTAGTTGTATCATATGTACCGTGTCATATGTCTTGTAATTGGCATCAGTTATTGTATATATGAGACACTCTGTTTTATCTGTGTTCCGCATTTATTTTATCTGTGTTCTCAGTTTATATTTTGTCCTAAACTATTATGAACCATCGTAGTTCGTTTTATACTGGAATTGGGGTATGTCGATGGGAGGAAATAAATCAGAGAAGAAAAACAAAAGAATATATATATATATATATATATATATATATATATATCACTCCTATCGAGATAACCAATACTAGTGTAAGGCCTAACTATTGATGGCCGCTCCTCAACAGCCTTATTCTTCGCGCTAGTTGACAGCACTACATCGTAGTGTTCTTGGCTAGCGTGGGTATAGAGGTGGGCGTCACATGCATCTTCCTCCAATGCACAATATTTGCAAACAATAGGCTCTTTATATTTACTAGAGCAAATTACATTACCCTTTTTTAGATTTTATTTTGCAATTAGAAAGACCAATTAAATGTTTGAGGTGATTCACTGGACAAATTTGAATTTATTCCTGCTTAATATTAGGTGAAGTTATGGCAGCGAATTGCTTGGCTTTATAGCTTTTCATTCTTTACCATTATAGACAAAGATGTTTCTTAACCGAATGTAATTTCTTTTACCAAGTTCTTATTTTAGACCGATTTATGTTTATGAACTGCAAATTTCTGACATTTCTTTCTAAATTGCTAACTCTTCTATATCTACATAGACAAATTGTCGTAAATACAACCTGGCTATATTCATGAACTAAAATAATGTCATACTTATGTTTTTTGCACTTATTTTTATTTAATTTTTGCATTATGAATAATTAGTATTCAAGACGTGATTTCTAGTTTTATAATTTCTGAATACATTGATCTGTTAACAGTCAAATCTAATATTGAGCATAACAAAACTATTTCCTTTTCCTTTCAATCGTGGTAAGAATGTCAGGCAAACTTTTCAAAAATTATTTTTCATTGCGATAATATGAGGACATGGAACATAGCTATTACTGATTTGTCTCAAAATTTCATAATGGTGACTGTATAGTTTTTCAACTCCTTGATCGAGCTGATTATAAGACTCATCAATTCAAAAGTTGGGGAATATCATTTTTATAAATTAAGCTCCCTTAATTTGTTACAGGAATAATTTGATTACTGCACCTCATATTATGAGATAAGTGAGATAGAGTATTTATTTGCACTTATAATTAAAATTGTGTTGAAAATATCATAAGGAGGATTTGGAGATAGTCCATTATTTTTATTTAGTCTGGAGGAAACAAAAACTGAGTGTCATGTTTGGTTTTACAATTTGCTTCAGCTGGTGGAATCATGTTGATCACTGATGCAATGAAATATACATTTTTATGCCATGTGTATATGTAAAATGTACGTATACTGTTTGTATTTAATATGTTATTTTATTTTTCATTTTTTGGGTGCATTTGGTTAGTCTGATGACCGATGATTGGTTGTACGTTAGAACCCATAGTGTGTTTTTACAAATTTTATGCGGTGCCTGTTTAGTAATTCTACATTATTATATTTTAAAAGATGGAAATTTTTACATACATCCGTATGATCAATAGAAATTACCGCTGGATTCCAAAAAAAAATTGTTTTGTAAATTACTTCACTGTTTTGAAAAAATAAGGTGAAATTTATGGGGATATTCAAAGAATCCTTACACTTTTAAAAGAGAAACCATATTTCCTTGGTTTTTTAGACATGTTTAAGGATGCTTTTTCTTCAAAAGAAAGAACCCTTCTATAATTTATTGTTCCTTTTTTTTTTTAAATAACAGCTGATTTGAAGTGTCTGGACTTCCAAAACCTTCCTGATTGAAATACTCATTTATAGATTGTACATAACTTATGTGCTTCATATAAGCCCTTTATATGGCTTGTTAGTAACAACTTGAAGCCAAATGCTCACTTTGTCTTTTCACTGATAAACCAAAATTCTTTATTTCTGTTTGGATTCAGTAGACAGTGATTCATGAACATTTTTTTTATTACCGGCTTTTGTTTGGATTTAACAGGCACTGATCATAGGGTATTTTTTTGTGGATGAACTGGCTGTTGCCACCAATAATTTCAGTGATGGCTGTCTATTAGGAAGAGGTCCATTTGGTCCAGTTTTTGTAGGAATATTAAAGCGCCCCGACGAGGTATATTTTAAAGCTATGTATTGTGGCATGGAACGTTTAAGTTCCTTTTTGTTATAAAGCTAGTTACCAACATATATAATGTTATAACTTTTTAATTATTTACTATGTCAATAGATTGTGGTTATAAAGAAGATTCATAATGTTCATGGTCAACAAAGTTACGAAGCATTTCATACTGAAGCGAGGATGTTAGCTGAGCTTCGTCATCCTAACCTTGTTCGTACGATTGGGTTTAGTGTCGAAGCTATATACAGATATTTAGTATTTGAGTACTTGCCTCTTGGATCACTGGATGACCATCTCTTCAGTAAGTATCGCATTTATATTCGTAAATATGCGTACAAATTTATGGTGATTATGGACATATGGATCTGATTTTAATGCATTGCTATAACATAAATCATTATATCATATAACATGTGCAACATGGCAAAAATAATGCAATTTTGCGATGGGAGCAGTCGTTAAAATGTCCCATGCACACATCCCAATCAATTCCAATTGAACCTTTTGAATGTTGATTTTTTGAGGTTTGATCTTTTTTCATATACCATCATTAGTTGTGTGTAAATAAGTAAGAAAAACAGCGAGTGAAAATCACTAGAGGAAGAAGGTGATATTTTAACTCAAAAGAGTTATCATATTAGCTTTAGGAATTGTTTTTTCAATGACAACTTCTTTCTCGGATTTCATAGGGCATTATTCAAAAATGACACCTCTAGATTGGAAAGGAAGGATGAAAATAGCTCTATGTGTTGCCCAAGGATTGGAGTATTTGCATCTTAGGCAGGATCCATCAATTATTTATAGAAATTTGAAATGCTCAAATATATTACTACAGGAGGACTACCATGCAAAATTATCGGTTTTTGGATTGGCTAAAGAAGGACAAGTTGGTCATGAGCCTCACGCTACAACATCTGCTGTGGGATCTAGTGGATATATTGCCCTTGAATATGCTAGCTAAAATTGGTACATTGACTGTCAAATCTGATATACATGGTTTTGGAGCTGTGCTTTTAGAAATTCTTACTAGAAGGAGATTTGGTGAATTTAATGACGGCGAAGCTCAAGATTTTGCTACTTCGGTATGTGCTTTCTCTAATCATTTTTTTCTGAGTGTTAAAAAAAGGTTGAGCATAAAGATTTTACTTCTTGAAAGCATTCATAGCTATGAATATAAATGTGATATCTTATACTAGAACGTGAAATTTGAATTCCATTTTACAGGAAATCAGTTTATAAATATTTGAGTATATATAAGTGTTCATACATTTTTGCATCATCCTTATTTTTGTAGTGTTATTTATGTATATTATTATTTGTGGAAAAAATATGCATTAAAGTATCTTAATAAATTGAAAATGAGGAGAATTTATTATTTACAGGGTATATTTTTGAAGTATCTTACTATTATTCATTATATTCTATTATATGGAAGTGACAATTACAATACTAATCACGACATTCAACTTACCATGTTTTACTAATTTATTTTTTGAATCTACGAAGGATCCCATTCAACTTACCATGTTCAGTACAATTTTTTAAAGTTGATTGCAGTGCCTCCAAAAATCAGTAGTGGGAGTGTAGATGGAGTGAATGGAGAAATGTTCATGCAGGATACAGAGCTTTGGAAGAAGAGAGCAGAACACTACAAGAAGCTTGTTAGTAGCTTAGGCCATAAGGGTAGGATACAGAGTTGGTTGATGGTGGTTTTGTATTTTGGCCGCAGTGTCGCATTCGTTGTTTGTAAGCTTCAAAATATTTTGTAG

Functional annotation

Database	accession number	e-value	annotation
nr	KZV56317.1	5.4e-22	putative LRR receptor-like serine/threonine-protein kinase-like
Swissprot	Q9SIB6.1	1.7e-20	PBS1-like protein 6
trEMBL	A0A6A3BNS8	1.5e-21	Putative serine/threonine-protein kinase RLCKVII

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G28590.1	32.41	7e-22	101		Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g78334	AT2G28590.1	216	99	5	38	207	86	300	32.41	7e-22	101
g78334	AT5G16500.1	225	95	6	35	207	59	277	32.00	2e-21	100
g78334	AT1G07870.1	219	93	5	38	207	91	305	33.33	6e-21	98.2

Ortholog group

Species	Genes
Allium cepa	g140820.t1; g215756.t1; g264064.t1; g279094.t1; g288134.t1; g320610.t1; g325414.t1; g327586.t1; g370993.t1; g373171.t1; g385188.t1; g41302.t1; g432472.t1; g484680.t1; g522473.t1; g78334.t1
Allium fistulosum	AfisC1G00181; AfisC1G03349; AfisC1G08928; AfisC2G03603; AfisC3G01506; AfisC3G05895; AfisC3G08081; AfisC6G02924; AfisC6G03652; AfisC7G03693
Allium sativum	Asa4G00687.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF07714.14	Pkinase_Tyr	Domain	55	146	55.4	4.7e-15

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005575	C	cellular_component
GO:0008152	P	metabolic process
GO:0002218	P	activation of innate immune response
GO:0002221	P	pattern recognition receptor signaling pathway
GO:0002253	P	activation of immune response
GO:0002376	P	immune system process
GO:0002682	P	regulation of immune system process
GO:0002684	P	positive regulation of immune system process
GO:0002757	P	immune response-activating signal transduction
GO:0002758	P	innate immune response-activating signal transduction
GO:0002764	P	immune response-regulating signaling pathway
GO:0003674	F	molecular_function
GO:0016020	C	membrane
GO:0006952	P	defense response
GO:0042742	P	defense response to bacterium
GO:0003824	F	catalytic activity
GO:0004672	F	protein kinase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0004675	F	transmembrane receptor protein serine/threonine kinase activity
GO:0004888	F	transmembrane signaling receptor activity
GO:0007165	P	signal transduction
GO:0007178	P	transmembrane receptor protein serine/threonine kinase signaling pathway
GO:0005623	C	cell
GO:0006464	P	cellular protein modification process
GO:0006468	P	protein phosphorylation
GO:0006793	P	phosphorus metabolic process
GO:0006796	P	phosphate-containing compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0006950	P	response to stress
GO:0006955	P	immune response
GO:0040007	P	growth
GO:0007154	P	cell communication
GO:0007166	P	cell surface receptor signaling pathway
GO:0007167	P	enzyme linked receptor protein signaling pathway
GO:0008150	P	biological_process
GO:0009605	P	response to external stimulus
GO:0009607	P	response to biotic stimulus
GO:0051707	P	response to other organism
GO:0009617	P	response to bacterium
GO:0009814	P	defense response, incompatible interaction
GO:0009816	P	defense response to bacterium, incompatible interaction
GO:0009966	P	regulation of signal transduction
GO:0009967	P	positive regulation of signal transduction
GO:0009987	P	cellular process
GO:0010646	P	regulation of cell communication
GO:0010647	P	positive regulation of cell communication
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016740	F	transferase activity
GO:0016772	F	transferase activity, transferring phosphorus-containing groups
GO:0016773	F	phosphotransferase activity, alcohol group as acceptor
GO:0019199	F	transmembrane receptor protein kinase activity
GO:0019538	P	protein metabolic process
GO:0023052	P	signaling
GO:0023051	P	regulation of signaling
GO:0023056	P	positive regulation of signaling
GO:0031347	P	regulation of defense response
GO:0031349	P	positive regulation of defense response
GO:0036211	P	protein modification process
GO:0038023	F	signaling receptor activity
GO:0043170	P	macromolecule metabolic process
GO:0043207	P	response to external biotic stimulus
GO:0043412	P	macromolecule modification
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044464	C	cell part
GO:0045087	P	innate immune response
GO:0045088	P	regulation of innate immune response
GO:0045089	P	positive regulation of innate immune response
GO:0046777	P	protein autophosphorylation
GO:0048518	P	positive regulation of biological process
GO:0048522	P	positive regulation of cellular process
GO:0048583	P	regulation of response to stimulus
GO:0048584	P	positive regulation of response to stimulus
GO:0050776	P	regulation of immune response
GO:0050778	P	positive regulation of immune response
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051704	P	multi-organism process
GO:0051716	P	cellular response to stimulus
GO:0060089	F	molecular transducer activity
GO:0065007	P	biological regulation
GO:0071704	P	organic substance metabolic process
GO:0071944	C	cell periphery
GO:0080134	P	regulation of response to stress
GO:0098542	P	defense response to other organism
GO:1900457	P	regulation of brassinosteroid mediated signaling pathway
GO:1900459	P	positive regulation of brassinosteroid mediated signaling pathway
GO:1901564	P	organonitrogen compound metabolic process
GO:0140096

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K13430	PBS1; serine/threonine-protein kinase PBS1	EC:2.7.11.1	Plant-pathogen interaction	ko04626

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network