result

Gene information

Detail information of g78425

Location

Gene	Chr	Start	End	Strand
g78425	Scaffold_35112:HRSCAF_354022	206536	209880	+

Sequences

CDS

Protein

Gene

>g78425.t1
ATGTGTGACTTCTTTTGGCAAAGAATGGAAAATAACACAGATCAACTAGGCGGAGATTTATCCGACATCATTCGCAGCAGCCTTAACCAGTCCGACACCCAATCACCTACCGACACCTGGCACTTCCCTACTGTTGATTCTGACCTTATGTCCTTTGATCGGCAGACATCCACCAATAATGACTATATCGACCAAGGCGATTTGTTTGGCATGAGCGATCAACTTGTTGTAGCTAGCAATGATGTAAAAAACCAGGGTTCTAACAACATTTTTTCTCGGGTGCTTCAAATATCGCCTATTAAGCATCCTCCGATTTCTCCTAGGGCGACAAGGCCGACTTTACATCATGATCATATGGTTAAAATTGATCATACTGCTCAGATCTCTTCTTCTCCCCGCCCTCCTCCTGTTGGAACTAAAAGAAGGTACTATTTCTTTGTTCGTTGATTTCTTTTATTTAGGTTACTCCTAGAAGTTCTGAGTGCGTGTGTCTGAGAACCCCTCGGCTTTATAAGGGTATTGATTGTAATTCAATGCATATTTTCTACAATTTTACTTTTTATCTTCGTAATGATGTATATTTTTTCTAAGAAAAAGTATAGCAAAGATCTTAATTAATAAGTGGATTTGTGGCATTTTTGTCAGATGAGATCTACAGTTCCCAAATGAGTATATCACTTACCTTCCTTTTATATCCGCCATGAAATTTCTTTTATAAAGAATTGCAGTCAGCTATTTATTTTTTTTGCATATAGCAACATTGCAATGAGAATATACTTGAAAAGGGATATGGATTTTGGGGAAAAGATAGCTTCCTTTTTCTTCTTCTTCTTTTTATTTCCCTTTTTAGACAGCCAAGCCACTAGTGTTTGTTGGCGTTTAATGTGCATGTGGCTTGCTACAAATCTGAAGTTATAAGTTTAAAAATATAACACGCATTCTATACATGTAAATAATATTAGATTTAGTTATCACTTTTTAATGAAATCAATCTCTTTCATTTAAATTGCAATCCATATGTCTAGAACTTCAAATAAATATTGCATGATAAAAAAATCGTAATTTTTCCATGAAATTCTAGCTAACATATAAAGTAAATATGAATGATGAAATAAAAAGCAGAAAGGGGCAAGGGAAAAAAGTGGTGTGTGTACCAGCACCGGCAGCAGCAAGCAGTAGATCAAGTGGAGAAGTGGTACCATCTGATCTTTGGGCTTGGAGGAAGTATGGCCAGAAACCTATTAAGGGTTCTCCTTATCCCAGGTAATCATTTCTATGTCATAAATCATAATATTCTTCTCACCTTTTTCGCTTACCGTATTATCTTCAGAGTACAACTAGCATTTACCTGAAAAGAATATAAGTCTTATTGCATGCATAACAATCATCTTACATTTATCAGTGCTATACTTTATACAAGTGAAGATTGTGATTCTTTCTCTCCACCATCCAAATTGAATTAATACAACAAAAAAGTGATTATACCTTATGTTACATAACAAAGATTAATATTCCTTATGATGTAGTAATAAACCAGTAAAGTAATAGAGCAACAATCTCCTACTCCAAAAAAGTTATGTTTCCATGTCCAATACAATCAAAACCTTCAATCAATTAATTAAGAAAAACAATTAATCTTTGCTATTCATAACAAATACTTATTTCATATGATCCAATGGTGTCTTTTGAAAGAAAGTATTATCTTCTTAAAGCTTCCACTATACTCAATTTTTTTTTTTTTTGTCAATTTAAACAAATACACAAAAATTTAACAGTTCAACCATAAATTTGCACATCAGCCATTATTATTTGATTTTCGCTATAAAGTTCTATTTATTTATTGATTTACGTACATTTAACATTATGATAATAAATTTTTTTATGTGCAAAATTACTTATTACTATTCTTTTAATCAAGTCCATATCTTTTGATAAAAATTAGTTACTTTATTATTTAACTTATACAAATATATGTATGTACATGTATGTATGTTTGTATATTGTCCATGCCCTTTTTAATGTTTATTTTATACTTGGATATAAATTTAGCGAGTTTAATTAAAATTAAATAAGAAAGCGACGTATATAGGCGCATATAGTAGTAGTACAAATATTTAATATGGATGGATTGGAATAAAAAGGCACAGTAGAGAACCAATCTTTGGGACAAAGGAATCCATTTGTCAAGGACCATAATTATCACATGATGGGAAGCTTAGATTATTTATTTAACTTGATAATTACACGGTTAGGAAAATCGAGGAGTTGAACAAACACATTTAGTTACACTTACACAACTAATTCTTTTACCATTGTTATCCTGATCACTGGTATAAAATTTGATAACTTTTATTTTACAACTATATGAACATGGCATGTGGTGTACAAAACATTTATATGCTACTCAACTCAATATGCCAACAAACTGTAAAATTACAAACTGAATGTGAAATCACATCACATGTTTTGATTAAAATCAACTACGTTCTGCTAGAGATCTAAATGATTAAATATAATATTTGATCTAAAGGTCAAAATGAACGCAGATAAATCCATGGTGATTTGAACTGACTGTGTGCTTGCTAGAGTAAAAACTGAAATACTATATGCATTTCAAACAACAAACCTCATGAATAAGAAAATGGTGCAGGGGATATTACAGATGCAGCAGCTCAAAAGGATGCTCAGCAAGAAAACAAGTAGAAAGAAGCAGAACCGACCCAAACATGCTAGTCATCACCTACACATCCGACCACAATCACCCTTGGCCTACTCAACGTAATGCACTTGCTGGCTCCACCCGTTTCCAACCTTCCAAATCCAAAATCAATACCTCCGCCTCTTCCTCTTCTTCTAAAAAAGCTAGTTACAGCACAAAAGACAACCAGTCAGAAAAAAGTAGCACTGATACTAAAACCATCAACGTGAAAGAAGAATTGATAATAAATGAGCAAATTCCAATGGATAATGATTACACATTCAATCAAGATTTGTATAATGACCCGTTGATTAGTTCGTGCAGCCACACGGATGACTTCTTTGCGGATTTGGCAGAGCTGGAGAGTGACCCAATGAGCCTCATTTTTACAACACCGGATGATGAAGAAGATCAAAAAGTGAGTGATAAAGGATTGGCTGTTGATCCATTTGTTAACATGTTTGATTGGGGTAAAGGTTTATGATGATTTTTTTTTTTCAAAACATAGCAATAGGTTGCATATAACGGTATTGCTATTGTTTAAACTAAGTGTCCTTAAAGCGCAAATGATCAACGATAATCGTGGTAAAGCAGTTGATAAGTTGGAACTTCATTTCATTTCACAATATAGCAAGAAACCACCTTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010920047.1	2.1e-72	probable WRKY transcription factor 14
Swissprot	O64747.1	7.9e-53	WRKY DNA-binding protein 35
trEMBL	A0A6I9R3U9	1.5e-72	probable WRKY transcription factor 14

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G34830.1	59.38	3e-63	239	AtWRKY35;MEE24;WRKY35	WRKY DNA-binding protein 35

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g78425	AT2G34830.1	224	74	3	127	335	175	396	59.38	3e-63	239
g78425	AT1G30650.1	231	92	5	130	351	180	408	55.41	1e-56	217
g78425	AT4G01250.1	189	72	6	139	327	108	269	47.62	5e-39	159

Ortholog group

Species	Genes
Allium cepa	g56143.t1; g78425.t1
Allium fistulosum	AfisC2G09028; AfisC3G00809; AfisC5G05364
Allium sativum	Asa6G00515.1; Asa6G05582.1; Asa6G05591.1
Arabidopsis thaliana	AT1G30650.1; AT2G34830.1
Oryza sativa	LOC_Os02g47060.1; LOC_Os04g50920.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03106.12	WRKY	Domain	170	227	88.9	1.9e-25

Gene Ontology

Accession	Ontology	Name
GO:0000003	P	reproduction
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003006	P	developmental process involved in reproduction
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007275	P	multicellular organism development
GO:0009790	P	embryo development
GO:0008150	P	biological_process
GO:0009555	P	pollen development
GO:0009791	P	post-embryonic development
GO:0009793	P	embryo development ending in seed dormancy
GO:0009889	P	regulation of biosynthetic process
GO:0010154	P	fruit development
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0022414	P	reproductive process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048229	P	gametophyte development
GO:0048316	P	seed development
GO:0048608	P	reproductive structure development
GO:0048731	P	system development
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0061458	P	reproductive system development
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network