result

Gene information

Detail information of g79495

Location

Gene	Chr	Start	End	Strand
g79495	Scaffold_35300:HRSCAF_357271	160333	161067	-

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020682551.1	6.1e-51	transcription factor TCP7
Swissprot	Q9FMX2.1	1.6e-43	Transcription factor TCP7
trEMBL	A0A0E0CTF8	4.0e-52	TCP domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G23280.1	56.67	9e-56	213		TCP family transcription factor

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g79495	AT5G23280.1	240	47	12	22	230	25	238	56.67	9e-56	213
g79495	AT5G08330.1	240	65	10	34	243	25	237	49.17	3e-43	172
g79495	AT3G47620.1	95	25	2	17	106	90	183	67.37	2e-32	135

Ortholog group

Species	Genes
Allium cepa	g79495.t1
Allium fistulosum	AfisC7G03791
Allium sativum	Asa3G02023.1
Arabidopsis thaliana	AT5G08330.1; AT5G23280.1
Oryza sativa	LOC_Os02g42380.1; LOC_Os04g44440.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03634.10	TCP	Family	40	157	115.9	2.2e-33

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0042752	P	regulation of circadian rhythm
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043433	P	negative regulation of sequence-specific DNA binding transcription factor activity
GO:0044092	P	negative regulation of molecular function
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048519	P	negative regulation of biological process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051090	P	regulation of sequence-specific DNA binding transcription factor activity
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0065009	P	regulation of molecular function
GO:0080090	P	regulation of primary metabolic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K16221	TCP21, CHE; transcription factor TCP21 (protein CCA1 HIKING EXPEDITION)	EC:-	Circadian rhythm - plant	ko04712

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network