result

Gene information

Detail information of g84319

Location

Gene	Chr	Start	End	Strand
g84319	Scaffold_36152:HRSCAF_370315	846298	852930	+

Sequences

CDS

>g84319.t1
ATGTGGCCACGGTTAGTTTCTCACCTTCCTGCCATACTTTTCGGCCTGCGACTTTGTCGAATAGGAGGTTACCCGGTCTGCATCAATACTCTGGTTCGAATCGCACGGACCGGAAAACTACCACTTCCTTTTTTGGGCCAACCCTATTTTGTTCCACGCTTCTGGACCTGGCCCATTTGCCCACCAAATTCTTCCAATTCATCTTCTTTTTACCTGCTCCTTTCATCAACCGCGGATCTCCTCTTTCCTAAACGCTCCATTTTTCTCACCCCTCGCTCTAATTCAAAGACTATTATTTCTCGAATCAGCAAAATATCTAAGTCCAATATTCTCGCCATGGCGTCAAACACCCCGCCTCAAAACCCTAACCTCCTCCGCTCACTCAACGCCGCAGCTAACTCCTCCTTCTCCACTCCTCCCCTTAGTCAAATCTCTCAGCTCCACCGCCAAAACCCTAATCCTAACCCCTACCAACATTCCCCCAACCCTAACTCGTCTTCAAACCCTAACCCTAAATCTCGCCCGCCTCAAAAACCCAATAATCCCCCATCCTTCAAATCCGCCGAGCTGACCCCTGCCGCCCGTCGCACCAACAAGAAGCGAAAGCTCCCCGACAAGCAAATTCCCGATCGTGTTGCTGCACTCTTACCTGAATCCGCCCTTTACACTCAACTTCTTGAATTCGAGTCAAGGGTGGATGCCGCATTGGCCAGAAAGAAGGTTGACATTCAGGAAGCGTTGAAAAATCCACCATCTTTGCAGAAGACTTTAAGAATTTATGTTTTCAACACATTTAATCCGGCAAAGGTCAATGAACCTGCGTCATGGAGTTTAAAGATCATTGGGAGAATTTTGGAGGATGGAACTGAAGAGAGCGCAGGGAGAGTAAATCCAAATTATCCCAAGTTTTCTTCATTTTTTAAGAGGGTTAGGATTGATTTGGACCCGATGTTATACACAGAGAACTCAACAATTATTTGGGATAATGCTAGATCGCCTTCGCCATTGGAAGGGTTTGAAGTTAAGAGGAAAGGAGACAAAGAATTTAATGTTACCATCACATTGGAAATGAATTACAATCCGGAGAAGTTTAAGTTGTCTATGCCATTGATGGAGTTATTAGGGATCGAAGTCGATTCCAGGGCTAGGATAATTACAGGGATATGGCATTATGTTAAGGCAAAGAAGTTGCAAATGCCTAGTGACCCTACTTATTTTACGTGTGACCCATTGTTGCAAAGGGTTTTTGGAGAAGATAAGATGAAGTTTTCTTTGGTTTCACAAAAGATTTCACAACATTTGTCATCTCCACAGCCTATCGTGTTGGAACACAGGATAAGGGTTTCTGGAAATGGTGCCATGGGGAATTCTTGTTATGATGTGATGGTTGATGTTCCCTTTCCTTTGCAGAAGGAGATGTCTGCTTTTCTGGCTAACACGGAGAAGCATAAGGAAATCGAGGCTTGTGATGAGGTGATATGTGCTTCAATAAAGAAGATTCATGAGCATAGGAAGCGAAGAGCTTTCTTTTTAGGTTTTAGTCAGTCACCAGTTGAGTTTATAAATGCACTGATTGCATCTCAAAGTAGGGATTTGAAGCTTGTTGCTGGGGAAGCCAGTAGGAATGCTGAAAAAGAACGACGCTCTGATTTCTATAATCAAGCATGGGTTGAAGATGCAGTAATTCGCTATTTGAACCCACATGAGCACTATGGAAGACAATATATCAGTTCGTGCAGTTTCAATTAG

Protein

Gene

>g84319.t1
ATGTGGCCACGGTTAGTTTCTCACCTTCCTGCCATACTTTTCGGCCTGCGAGTATTAATTGTCTAAATTAGCACTTCTGTTTGGACCTCTTCGGCCTTGTAGCTTTGTCGAATAGGAGGTTACCCGGTCTGCATCAATACTCTGGTTCGAATCGCACGGACCGGAAAACTACCACTTCCTTTTTTGGGCCAACCCTATTTTGTTCCACGCTTCTGGACCTGGCCCATTTGCCCACCAAATTCTTCCAATTCATCTTCTTTTTACCTGCTCCTTTCATCAACCGCGGATCTCCTCTTTCCTAAACGCTCCATTTTTCTCACCCCTCGCTCTAATTCAAAGACTATTATTTCTCGAATCAGCAAAATATCTAAGTCCAATATTCTCGCCATGGCGTCAAACACCCCGCCTCAAAACCCTAACCTCCTCCGCTCACTCAACGCCGCAGCTAACTCCTCCTTCTCCACTCCTCCCCTTAGTCAAATCTCTCAGCTCCACCGCCAAAACCCTAATCCTAACCCCTACCAACATTCCCCCAACCCTAACTCGTCTTCAAACCCTAACCCTAAATCTCGCCCGCCTCAAAAACCCAATAATCCCCCATCCTTCAAATCCGCCGAGCTGACCCCTGCCGCCCGTCGCACCAACAAGAAGCGAAAGCTCCCCGACAAGCAAATTCCCGATCGTGTTGCTGCACTCTTACCTGAATCCGCCCTTTACACTCAACTTCTTGAATTCGAGTCAAGGGTGGATGCCGCATTGGCCAGAAAGAAGGTTGACATTCAGGAAGCGTTGAAAAATCCACCATCTTTGCAGAAGACTTTAAGAATTTATGTTTTCAACACATTTAATCCGGCAAAGGTCAATGAACCTGCGTCATGGAGTTTAAAGATCATTGGGAGAATTTTGGAGGATGGAACTGAAGAGAGCGCAGGGAGAGTAAATCCAAATTATCCCAAGTTTTCTTCATTTTTTAAGAGGGTTAGGATTGATTTGGACCCGATGTTATACACAGAGAACTCAACAATTATTTGGGATAATGCTAGATCGCCTTCGCCATTGGAAGGGTTTGAAGTTAAGAGGAAAGGAGACAAAGAATTTAATGTTACCATCACATTGGAAATGAATTACAATCCGGAGAAGTTTAAGTTGTCTATGCCATTGATGGAGTTATTAGGGATCGAAGTCGATTCCAGGGCTAGGATAATTACAGGGATATGGCATTATGTTAAGGCAAAGAAGTTGCAAATGCCTAGTGACCCTACTTATTTTACGTGTGACCCATTGTTGCAAAGGGTTTTTGGAGAAGATAAGATGAAGTTTTCTTTGGTTTCACAAAAGATTTCACAACATTTGTCATCTCCACAGCCTATCGTGTTGGAACACAGGATAAGGGTTTCTGGAAATGGTGCCATGGGGAATTCTTGTTATGATGTGATGGTTGATGTTCCCTTTCCTTTGCAGAAGGAGATGTCTGCTTTTCTGGCTAACACGGAGAAGCATAAGGAAATCGAGGCTTGTGATGAGGTGATATGTGCTTCAATAAAGAAGATTCATGAGCATAGGAAGCGAAGAGCTTTCTTTTTAGGTTTTAGTCAGTCACCAGTTGAGTTTATAAATGCACTGATTGCATCTCAAAGTAGGGATTTGAAGCTTGTTGCTGGGGAAGCCAGTAGGAATGCTGAAAAAGAACGACGCTCTGATTTCTATAATCAAGCATGGTAATTTTCTTAATTCAGACAGCTATGTTAATTTTACACAGGTCCATGCTCTCAACCACCCCTGTTTGCGTCCTCATAGCATTGATGAAATTTAAAATGGTTTCTAGTTGGCCCACTTGCTCAGTCCCTTGCAAATATCTGCAGTATAATCTAGATAATAACTCCTTATACATTGTTCACCTGAATTCTTAAAATGTTACTATTGTCGTCATTTGGTGTTCCTTTTACATGGACATGAATAACCATTCTCATTAAGATCTAGGCATGCCATATCCTTCATTATAAAGTCTATTTATATATTCTTGTCTTTGTTTTTTTCACTTGATTTTCACTTTGTATGCTCATATCTGAATAGTTGAGGTCAGCTTTACGGGAACTTGGCCAAAACATTTTCTCTTTATAAAGCTTGACCGTGCCATTGTAAATGGTTTGCTCATATGTTTTATGATGTCATATCAATGTATACTCGAATGTTTATGTTTCTCGGCTTTTTCTTCTTCTAATAATTATCACACTTTTAAAACAACATTTACATCTTTACCATATTTGTCATACGCTCACGTTTATTCATGATTGTCTAAACCTCAGTCCTAAGAATTCTAAAAGTAAAAAAGATATTTGGAACAAAAGATACCGTGATTCAGTTGTATGCAATTACTATTTTAATCCCTCATTTTTCTTTTAACCTCCTTTTTCTTTGTCAAAAATTTTACCCTTTGTTTTTTGTATTTAACCCCGACATTTTCTGTCAAAAATCTTAAAATCCTACGATTTATATCCTGTTTCAGATCGAATCATTCATTTTACGATTCGATTTATATTTCGATTCAAATTAGTTAAAATCCTAATAGAGAAAATTCATTCAACACAGGTTTGATATATTCGATATACTTATTTGTGTCTACAACTTGAATGCTAAGTTTTTCTAAACAAAGTAAAATGGAACAAAAGAAGGAAAGAAAGAAAAAAAAGAATTTTAGGTTTTGATGTAGAAGTTCAAACATCAAAATCAATTTCAAAATTTATACGAATCTTAAAATATGGATCTTTTGAATCCATTATTTACGATTTAAATTCCATTCGATTTAAAATTTAAACTTCACATTTATGATTTTGATAACCTTGTTCCTCAAAATATCCTCACTTTAGTTCTCCCTTCTATTTCAAAGTTTGGATGGCTAGATATTGTTTTTTTGGTGTCATGAGAGATTCGATTTGAGTGATGTTTTAGGCTGTAGATTGTTTCAACAAATTTCGAGATTCTTTGAGATTTAGAATTTGAGGGAAAACAGATTGCAATTTAGTCGGTAGTAAATTATTTCATTTGAAGGGGCAAAAACAAAACTAGTTAGTGCTACTAGAATTTCCTTGTATGTGTGTATATGTACATATAAGCATATATAGAACCAATGTTTATCCACTCCTTTTGTTTCTTCCGTTCTTTCGTATTTTCATGTACAATTGAAATAACGACGACGATTGATATGGAATCAATTTCTCAATTTCCTTTATCAGTATGAGAGATGAATGTAGTGCCGAAATCATTTGGTTGCACCAATATCTCGGGCAGTGTAGATGGGGGGTTCTTTGATGAAATGGGTGGTGGTAGTATCGTTAGTAGGAGGGCATTTAGAGATTCTAAAAGGACACCTTTGAAATGTATTCATTCAGTTTCTTTTATAAATGTTGTAGATGGTGTGTTTGATGATAACAAATCTTTTCAAATCTATACATAGTATGCACATGAAAATTAAGCATAGTATAATGTATGCAGGGTTGAAGATGCAGTAATTCGCTATTTGAACCGTAAGCCTCCAGGTGCCGCTGATGCTGCTGGGAGCACATGAGCACTATGGAAGACAATATATCAGTTCGTGCAGTTTCAGTGAGTTCACTACGATTTATTCGTCTGTTCGTTTTTCTTGATATTGGATGTAGACATAGTCTATAGGCTGTCATGGTATTAAAATTTTGAAAAAGTGATGCATGATGGTTTGATACTGTCTCTTTGACTCATTGTTTTCTTAACATAACTGTTTTATTGGATTGTCTGTGTTCTCTTAATGTTCAAATTACCCCCAAGATAAAACTTTATCTAATATCAGGGTATACATTCAGATGCTTCAACATTTTTACAAGTTTTCTACGACATAGCAGCGAATGACATAAATCAAAATTTGACATTCAACTTTGCAATTTGTTGACTGTCGAGATTATGTGCTATGTTTTGTCCAAGGCCTACCATCATTTCATTTTAGTACTACACTGCCTAATAAATGTCAATACATAATTAGCTGTAGTCTCAAATCTTTCTCGAATTGCTGCTTATTATTTTGGTTCATCATGTTTGGTTTGCATAGTTATTTATTTTTGTTCCACTGGATTTTTCATCTCCCCACTGATTTGAACAGTTCATCATATGCTATGGTTTGAATTTTATTTATGTATAAGTCGAATATGTTATGGACAAGATCATCACAATCTTTTATGTCAATGTCATTTTCAAGTTCACTCTACCTATTTATAAATCCCAGGAATCTGTATTAAAAAAAACTGTAAAAAGAAGCTATGGGCCATTTGTATTTTCCTAAAAAAATAAGCAAAATAAAACCCTTAAAAATTCAGTGAGATCAGTCAAATGTCAAATATACATCAGAATGTAAGCCGTGCTTGATGTTGATATTGATCAGAATATACAACAATAAGTTATAATTAAGTGTGCTATCGCAACTTCTCATAACCAGTATGAAACCAGTCAAACTTATGGAGATGTAAATATATGACTGAAAAAATATCATATTTTACATGACATTGAAGCTTTTTATATGCATCTAGTAAACGATGGACGTGGAAAGGGCAACTTACTTGATGTTGATATTGTATGATGCATGTATATTTCACCATTCTGGTATACAATTTGTCTGAAAGATCAATAGAAGGACGCATTCCCACAGATGGGAGTATCACTAAGTTGAGTAGGATGAATATTTGTCACAGACCTTCGTCGAATCCTGCGTAGAATATTTTGTCATTCAGATTCGTCCTCCTTTTCCTTATAAAGAAATTGAAGTTTTATATATTGGTGATGAAATAGGACATGTCTTAGCTGTCCAATTTGATATAAAATGAGTCTTACAGTAACTAAGGGGTGATCATATAAATGTTGAGCTAAATTTGTTTTTGTGGGTGTCACTTGTAAACATAGAGTTGAAATGGGAGTGGAGATGAAGCGATAATCAAGAAAGAATATTTTGTGCAGTCGAAAATCTGAAACAAAATGAGATTATGTTTTAGTAAAATTATGTTTATTAGTACTAAAACTATTTAAATATCAATTGGAACTTATGGTGTTGGTTTTTATTCATTATTACTTGTTTTTAACGTAGATATAATTTTGAAATAATTTTGAAATTGTACAAGTCAGAGCATAATTTGAAATTGGGAGAACCACCTTGGTTTGCTGACTAAAGAAGACAGATGAATAATCAAACCAACCGTTAGGGAGGTTTGCTTACCGTCACTAGCCAAAATCAATTTTTCTGAAGCCAAAAAAACGTGAATCTTGTCTCATCGCGGTTTACCTAAAAACGTGGATTTTGTCTCATCGCGGTTTTTCTAAACTTCCTCCTTTTACTTCACGCATCAAAGATTCCAAATTTAAATCTATTATGATTTTCAAATTCTAAAATTCCAATTTCAAATCGACAATTTTGAATGCTTTGATTAATATTTAAATTTGAAATTCATATTTTCAGATTCAAATCTCAATTTATTCTTTTCCAACATATTATCACTTAATGTTTAAGTAATATTAACAAAAATTTTAAATGTATATTTCTTATCAAAGTTATACAATCGAACGGTCGGTTTCTCCACCGTTGTGCGGTTATACTAGTTTATTCTATTTCTTGTTCATTTGTTTTGGCAACATCAGGAGGAAACTCTCCAATCTGTCATTAGACAATTTGTCTTTAATATTTTGGTTGCATTATCATAAATGTTACGATTATAAGTGGGACATGTTCCATCCGCTTTGGAACATTGAAATGTGCTGTGAGTAGCATCTGGGTCATGGTGTTGTCGTATGACCCTTTTTTCTTCCATTTTGGATAAAACTACCTTTTACAAAAGACTGGCTTGGATCTTTTTTGGGCTTATTAGCAAAAAACTTGGGTTTAGTTTTTATTTTTATTTATGGCACGCGCATCACAGACGTGTGTGTAATATGTATGTAAGTCATGTCGTAACCAGATACAAGGCTGGACGATTTTTGTTTTATTATCACATGAATTTAATTGGTTGGAGGACAATAATTTTTTATTTAATATATGGGTTCCAACCTTTTGGTATTTGTGGTCTAATAGAAAGCTGCTGATGACTGAGTTTTTGAACAAATTTAGTTTGCAAGCTACCGGGTGATAAATTTCAGCTGACTGTTATATTCCTTCGTTGGTACTAGAGTAGTTAAAATGTCTGTAATATTATATATACATTTATATGTATGTATGTATTTTAACTGGTGTGTGCTGGTAGAATGTCACGGGATGTATTATCAGCTTGAAACATGTTTATAATTTATGAAGAGTGCCTTGGGTTTGGCTGACAAATGAAAATACCATATTTGATAGTTATGATTTCATAACACCAGTGACTATGTCAATTGCTCTGAGTTAGCAACACTAACTTGGGAATACTATGGTTGACATTGACACTTGAATGAGTGGCTGTTGGCGTAGGATTAATTTGTTAGAGACATGTGCTTTTTATTGTAGTTATTAATTGGGTCCGTGAATGCTGACAATTTAGTTATCTATATATCCATGATACCCTATATAAAATTGCATGCAATTCAGGATGTTTTCCTCACCTTTTCTTCCGATTAATTATATTTTTCTTGTTATTTTTTGCAGATTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008788860.1	1.1e-178	SWI/SNF complex component SNF12 homolog
Swissprot	Q9FMT4.1	4.2e-156	SWI/SNF complex component SNF12 homolog
trEMBL	A0A8B7C041	7.7e-179	SWI/SNF complex component SNF12 homolog

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G14170.1	68.29	1e-160	563	CHC1	SWIB/MDM2 domain superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g84319	AT5G14170.1	410	114	6	171	566	114	521	68.29	1e-160	563
g84319	AT3G01890.1	402	129	6	171	566	53	452	65.92	2e-147	519

Ortholog group

Species	Genes
Allium cepa	g84319.t1
Allium fistulosum	AfisC2G03489
Allium sativum	Asa0G05836.1
Arabidopsis thaliana	AT3G01890.1; AT5G14170.1
Oryza sativa	LOC_Os04g31320.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02201.15	SWIB	Domain	363	434	70.1	9.5e-20

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0008152	P	metabolic process
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006139	P	nucleobase-containing compound metabolic process
GO:0006259	P	DNA metabolic process
GO:0006281	P	DNA repair
GO:0006725	P	cellular aromatic compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0006950	P	response to stress
GO:0006974	P	cellular response to DNA damage stimulus
GO:0007275	P	multicellular organism development
GO:0008150	P	biological_process
GO:0009314	P	response to radiation
GO:0009411	P	response to UV
GO:0009416	P	response to light stimulus
GO:0009628	P	response to abiotic stimulus
GO:0009909	P	regulation of flower development
GO:0009987	P	cellular process
GO:0010224	P	response to UV-B
GO:0010468	P	regulation of gene expression
GO:0019222	P	regulation of metabolic process
GO:0022622	P	root system development
GO:0033554	P	cellular response to stress
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0034641	P	cellular nitrogen compound metabolic process
GO:0043170	P	macromolecule metabolic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0046483	P	heterocycle metabolic process
GO:0048364	P	root development
GO:0048580	P	regulation of post-embryonic development
GO:0048731	P	system development
GO:0048831	P	regulation of shoot system development
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050793	P	regulation of developmental process
GO:0050896	P	response to stimulus
GO:0051239	P	regulation of multicellular organismal process
GO:0051716	P	cellular response to stimulus
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0071704	P	organic substance metabolic process
GO:0090304	P	nucleic acid metabolic process
GO:0099402	P	plant organ development
GO:1901360	P	organic cyclic compound metabolic process
GO:2000024	P	regulation of leaf development
GO:2000026	P	regulation of multicellular organismal development
GO:2000241	P	regulation of reproductive process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K11650	SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D	EC:-	Thermogenesis	ko04714

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network