result

Gene information

Detail information of g85955

Location

Gene	Chr	Start	End	Strand
g85955	Scaffold_36325:HRSCAF_374536	227741	229597	-

Sequences

CDS

>g85955.t1
ATGAAACAAACAAAACACACCTTCATCGTCTTCATCATTTTCCTAAATTTAAAACTCAAAGCTCAACAAAACTACTCAGGCAATGAAGTGTTGGACTGCAGCCATACAAAAACAGCTCCTCCATCTCCGTCATATCTATACACATGCAACAACCCTACTCGCTCTTGCCAATCTTTCCTCATCTTCAAATCTCAACCAAACTACAACACTATCAACACCATATCACAACTCTTCTCTACAAGCTCCATACGTCTATCTCATATCAACAACATATCAAATTCAGATCAAATATTTCCTATAAATAAAGAACTTATCATCCCTGCCACATGCTCATGTTTAGACAAATACTACCAAGCAAACACATCTTATGTCATAAGCGACAATGATACATACTTTTCTTTGGCCACTGCACAATACCAAGGTTTGAGTTCATGCAATGCTCTACTAGGAGAGAACCCTTATAGAACAGAGAATTTGCTAAGCGGTATGAATCTTTCTGTCCCTCTTCGATGTGCTTGTCCTACTCAAAAACAGTCATCGGATGGTACTAAGTTTCTATTGACTTATTCTCTTAATGAAAACGATAGCCTTCCTGATATTAGTATGAGGTTTGATGTCGATGTAAAGAAAACTTCCTTTGCTAATGGGTTTAGTGAAGTGGATCCTCTTGTTTTTCCCTTGACTACTATTTTGATACCCTTGTCTAAAGAGCCCTTAAGCTCCCAGACTATAGTTGTTCAACCTATTGAATATCCTAGTCAACCCCATACTCCTTTGGTTGTTGTACATCTAACCAAGAAGATAACATCGAAGATGATATATCTTGCGGTTGCAGGAATTGTTTTGGTTGTTGTTGTGTTGTTTATTTTCATATTTTTATTATGGCTAAGAAAACAAAGGGTCAAAATTAGAGAGGAACGGAGTAAGAAATCAGAAGAGTTATCAAAAGCCTTTTTCAAAGCAGTGTCAAGAATAGATCAAGCCTTGAAAATATACTCTATAGAAGACTTAAAAGCTGCAACAAAAGACTTCAGCTCAGAATGCAAGATTCAGGGGTCGGTTTACAAGGGATACATTCATAAAAAGGCGATAGCTATCAAGAAAGTGGAGAAAGACGTATCGAAAGAAGCTAACATTCTATACAGACTCAACCACTTCAACCTTATAAGCCTATTTGGAATCTGCAAAGTAGAAGAATCGCATTCCTACTTACTCTACGAATACATGGAAAATCAATCCTTAAAAAACTGGCTTCAAAACCCAAATCTCTCTGGCCACTGGATGTGGACCCGAAGGGTGCAGATCGCCATAGACATTGCTAACGGGCTCGACTACATCCACAATTTCACCTACCCACCATACGTGCACATGGACATAAAAACAAGCAACATACTTCTAAATGAAAAGTTCAGAGCAAAGATATCAAATTTTTCTATAGCAAGAAGCACAGAGAGGATGTCTACGAAGAATAGAGATGGGACGTTTGGTTATTTAGCACCCGAGTATTTGGATTCGGGTATCATAAGCCCGAAACTGGATGTGTATGCATTTGGGGTGGTGATGGCGGAGTTGATAACGGGTAGAGAGATATCGAATGAACGTAAAGGGAGGATGGAATGGTTGTTTGAGTCCATTGTGTGTATGGTGGAAGGAGAGGCCCCAGAGAAGGAGGTAATGGAATTCATGGAAGAGAGTGTGAGGAATGTGAGTCCTATTGGGCTTGTGATGGAAGTGGCTAAGCTATGTGTTGCTTGTTTTGTTGCGAATGTGGAGAGGAGGCCTAGTATGAATGAGGTGGTGAGGGTTCTTTCTAGAATACAAGTTGATTCACAAATGTGGGCTTTGGCATATCGATAA

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	ONK60171.1	3.9e-195	uncharacterized protein A4U43_C08F15130
Swissprot	O64825.1	5.8e-95	LysM domain receptor-like kinase 4
trEMBL	A0A200R7I5	2.1e-142	Protein kinase domain

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G23770.1	37.98	1e-105	380	LYK4	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g85955	AT2G23770.1	624	348	11	6	613	7	607	37.98	1e-105	380
g85955	AT3G21630.1	625	350	22	44	616	16	603	29.76	2e-56	217
g85955	AT3G01840.1	634	361	21	33	606	34	618	25.87	6e-52	202

Ortholog group

Species	Genes
Allium cepa	g85955.t1
Allium fistulosum	AfisC1G03053
Allium sativum	Asa7G05690.1; Asa7G05709.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF07714.14	Pkinase_Tyr	Domain	352	603	127.6	4.6e-37

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network