result

Gene information

Detail information of g86967


Location
GeneChrStartEndStrand
g86967Scaffold_36444:HRSCAF_377994271829319800+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020276907.16.1e-288lysine-specific demethylase JMJ25-like isoform X2
SwissprotQ9SSE9.14.7e-160Protein JUMONJI 25
trEMBLA0A8B7CNS15.2e-273lysine-specific demethylase JMJ25-like

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT1G62310.147.897e-148 522transcription factor jumonji (jmjC) domain-containing protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag255533.t1; g459650.t1; g532603.t1; g86967.t1
Allium fistulosumAfisC1G04398; AfisC2G07390; AfisC7G02477; AfisC7G03329
Allium sativumAsa3G02300.1; Asa3G02916.1; Asa3G02918.1; Asa6G05198.1
Arabidopsis thalianaAT1G11950.1; AT1G62310.1
Oryza sativaLOC_Os02g01940.1; LOC_Os02g58210.1; LOC_Os02g58210.2; LOC_Os03g31594.1; LOC_Os03g31594.2; LOC_Os09g22040.1; LOC_Os09g22540.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF08879.7WRCDomain145246.81.7e-12
PF10497.6zf-4CXXC_R1Domain24531024.91.6e-05
PF02373.19JmjCDomain1117121352.74.6e-14

Gene Ontology
AccessionOntologyName
GO:0051276Pchromosome organization
GO:0005515Fprotein binding
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0000785Cchromatin
GO:0000976Ftranscription regulatory region sequence-specific DNA binding
GO:0001067Fregulatory region nucleic acid binding
GO:0008152Pmetabolic process
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0003682Fchromatin binding
GO:0003690Fdouble-stranded DNA binding
GO:0003824Fcatalytic activity
GO:0005102Freceptor binding
GO:0007165Psignal transduction
GO:0005488Fbinding
GO:0046872Fmetal ion binding
GO:0005506Firon ion binding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0005654Cnucleoplasm
GO:0005694Cchromosome
GO:0043231Cintracellular membrane-bounded organelle
GO:0006081Pcellular aldehyde metabolic process
GO:0016570Phistone modification
GO:0006325Pchromatin organization
GO:0006355Pregulation of transcription, DNA-templated
GO:0006464Pcellular protein modification process
GO:0006482Pprotein demethylation
GO:0006807Pnitrogen compound metabolic process
GO:0006996Porganelle organization
GO:0007154Pcell communication
GO:0008134Ftranscription factor binding
GO:0008150Pbiological_process
GO:0008214Pprotein dealkylation
GO:0009058Pbiosynthetic process
GO:0009719Presponse to endogenous stimulus
GO:0009725Presponse to hormone
GO:0009755Phormone-mediated signaling pathway
GO:0009889Pregulation of biosynthetic process
GO:0009891Ppositive regulation of biosynthetic process
GO:0009893Ppositive regulation of metabolic process
GO:0009987Pcellular process
GO:0010033Presponse to organic substance
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010557Ppositive regulation of macromolecule biosynthetic process
GO:0010604Ppositive regulation of macromolecule metabolic process
GO:0010628Ppositive regulation of gene expression
GO:0044212Ftranscription regulatory region DNA binding
GO:0014070Presponse to organic cyclic compound
GO:0016043Pcellular component organization
GO:0045935Ppositive regulation of nucleobase-containing compound metabolic process
GO:0045893Ppositive regulation of transcription, DNA-templated
GO:0016569Pcovalent chromatin modification
GO:0016577Phistone demethylation
GO:0016999Pantibiotic metabolic process
GO:0017000Pantibiotic biosynthetic process
GO:0017144Pdrug metabolic process
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0019538Pprotein metabolic process
GO:0023052Psignaling
GO:0070887Pcellular response to chemical stimulus
GO:0030518Pintracellular steroid hormone receptor signaling pathway
GO:0030521Pandrogen receptor signaling pathway
GO:0030522Pintracellular receptor signaling pathway
GO:0031323Pregulation of cellular metabolic process
GO:0031325Ppositive regulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031328Ppositive regulation of cellular biosynthetic process
GO:0031490Fchromatin DNA binding
GO:0031974Cmembrane-enclosed lumen
GO:0031981Cnuclear lumen
GO:0032451Fdemethylase activity
GO:0032452Fhistone demethylase activity
GO:0032454Fhistone demethylase activity (H3-K9 specific)
GO:0032870Pcellular response to hormone stimulus
GO:0033169Phistone H3-K9 demethylation
GO:0033993Presponse to lipid
GO:0035257Fnuclear hormone receptor binding
GO:0035258Fsteroid hormone receptor binding
GO:0036211Pprotein modification process
GO:0042221Presponse to chemical
GO:0043167Fion binding
GO:0043169Fcation binding
GO:0043170Pmacromolecule metabolic process
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043228Cnon-membrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043232Cintracellular non-membrane-bounded organelle
GO:0043233Corganelle lumen
GO:0043401Psteroid hormone mediated signaling pathway
GO:0043412Pmacromolecule modification
GO:0043565Fsequence-specific DNA binding
GO:0044237Pcellular metabolic process
GO:0044238Pprimary metabolic process
GO:0044249Pcellular biosynthetic process
GO:0044260Pcellular macromolecule metabolic process
GO:0044267Pcellular protein metabolic process
GO:0044281Psmall molecule metabolic process
GO:0044283Psmall molecule biosynthetic process
GO:0044422Corganelle part
GO:0044424Cintracellular part
GO:0044427Cchromosomal part
GO:0044428Cnuclear part
GO:0044446Cintracellular organelle part
GO:0044464Ccell part
GO:0046184Paldehyde biosynthetic process
GO:0046292Pformaldehyde metabolic process
GO:0046293Pformaldehyde biosynthetic process
GO:0046914Ftransition metal ion binding
GO:0048518Ppositive regulation of biological process
GO:0048522Ppositive regulation of cellular process
GO:0048545Presponse to steroid hormone
GO:0050681Fandrogen receptor binding
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051173Ppositive regulation of nitrogen compound metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0051254Ppositive regulation of RNA metabolic process
GO:0051427Fhormone receptor binding
GO:0051716Pcellular response to stimulus
GO:0060255Pregulation of macromolecule metabolic process
GO:0065007Pbiological regulation
GO:0070013Cintracellular organelle lumen
GO:0070076Phistone lysine demethylation
GO:0070988Pdemethylation
GO:0071310Pcellular response to organic substance
GO:0071383Pcellular response to steroid hormone stimulus
GO:0071396Pcellular response to lipid
GO:0071407Pcellular response to organic cyclic compound
GO:0071495Pcellular response to endogenous stimulus
GO:0071704Porganic substance metabolic process
GO:0071840Pcellular component organization or biogenesis
GO:0080090Pregulation of primary metabolic process
GO:0097159Forganic cyclic compound binding
GO:1901363Fheterocyclic compound binding
GO:1901564Porganonitrogen compound metabolic process
GO:1901576Porganic substance biosynthetic process
GO:1902680Ppositive regulation of RNA biosynthetic process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:1903508Ppositive regulation of nucleic acid-templated transcription
GO:1990837Fsequence-specific double-stranded DNA binding
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2001141Pregulation of RNA biosynthetic process
GO:0140096

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K15601KDM3; [histone H3]-dimethyl-L-lysine9 demethylaseEC:1.14.11.65 Thermogenesisko04714

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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