result

Gene information

Detail information of g89424

Location

Gene	Chr	Start	End	Strand
g89424	Scaffold_36763:HRSCAF_386145	30189	35020	-

Sequences

CDS

>g89424.t1
ATGGCTTCTACGCATGCTTTATTCTTCATCGTCATCCTCTTTCTATTCTCATTCTCCTACTCTTTTGAGCCTATTAACAAAGAAGTGGAAGCATTGATAGCAATTAGAAAAGAACTGAATGACCCAAACGGAGCATTGAGCAATTGGGATGAAGATTCTGTTGATCCTTGTAGTTGGGCTATGATCACTTGCTCTTCTCAAAATTTAGTCATTGGCTTGGGTGCACCAAGCCAACGATTATCCGGAAAACTTTCAGGAGTAATTGGCAACCTTACCAATATCCAGCAAGTTTTATTACAGAACAATAACATAACAGGTGAAATTCCAGTGGAACTTGGATTGCTTCAGAAAATGCAGACTTTGGACCTCTCAAACAACAAAATTTCTGGAAAAATCCCAGATTCATTAGGGAACTTAACAAGTCTTCGGTATTTGAGACTGAACAACAATAGTTTGAACGGTGCTTTTCCCGTGTCTTTATCAAAAATTCATCAGCTCACTTTCCTGGACTTGTCTTACAATAATCTCACTGGCCCAATTTCATTTTTTCCAGCAAAAACATTCAATGCTGTTGGAAACCCGTTAATATGTGGAAATAAGACCACTGAAGAATGCTCAACAACTTCAATTCAGCCTTCTTTACCATTTTTATTGGATGTAAATCAGGGGACACCGAAGACTAAGAAACTAGCAGTTGCTTTAGGATCTAGTCTCGGGGCAACCTTTATTCTACTACTATCAATTGGCCTCTTTCTATGGTGGAGGAAGAAGCAAAAGCACCACTCAATTCTTGGGTTCTTAGACAGAGAAGAAACAGAGTCAGCAACAGCAACAATCTCACTAGGCAACCTGCACCAATTCACAATCCGAGAACTACTAACAGCTACCGATAACTTCAACCCCAAAACCATTTTAGGCAAAGGAGGTTTTGGAAATGTTTACAAAGCCAAATTATCCAATGGTAACATAGTAGCAGTAAAACGTCTGAAAGACATGGGATCCACAGGCGAAGCCCAGTTCAAAACAGAAATTGAAATGATCAGTTTAGCTGTACATAGAAATCTTCTACCAATTATCGGATACTGCATCACTGAAAATGAACGTATACTGGTCTATCCGTATCTCATCAATGGTAGTGTTGCTTCAAGACTAAGAGCAAAACCAGCATTAAACTGGAACACAAGGAAGAATATAGCACTAGGAACAGCAAGAGGATTGCTTTACTTGCACGAGCAATGTGAACCAAAGATCATTCATAGAGATGTCAAAGCTGCAAATGTGTTACTAGACGAGTCTTTTGAGGCAATAATTGGTGATTTCGGGCTGGCAAAATTGCTTGACCATAACGATTCTCATGTGACAACTGCAGTGCGTGGCACTGTCGGACATATTGCACCCGAGTATTTGTCTACTGGTCAGTCTTCAGATAAGACCGATGTCTTTGGGTTTGGCATATTGTTGCTTGAGCTTATTACTGGGCAGAGGGCTTTGCAATTTAGTATGGGAAGTCAGCAGAAAGGAGGAACTATTCTAGACTGGGTGAAGAGAGTGCAACAAGAGAAGAAATTAGACTTAGCAGTGGATCGTGACCTTGGAAGCAACTACGATCGTATAGAAGTGGGGGAGATGATACAAGTGGCATTACTTTGCACTCAACATCTTCCATATAATCGACCAAAAATGTCTGAAGTGGTGAGAATGCTTCAAGGAGATGGACTAGCTGATAAATGGGAAGCTTCCAATAAAATACAATGTAATTATGCGTTAAGTGCTTGTAATCATGATAGGGAGCTTGATACATATCTTGTAATGAATGGGGCTGATTTTGATTTTGGTGCAACTAACATAAACTATCATATAGGGCAATGGAGTAATTAA

Protein

Gene

>g89424.t1
ATGGCTTCTACGCATGCTTTATTCTTCATCGTCATCCTCTTTCTATTCTCATTCTCCTACTCTTTTGAGCCTATTAACAAAGAAGGTGCGACGCTAATTCAGTATTCGAATTTTCAGCTTCATCTTTTTTTTCCATTTTCTCCTTTCCACATATATTGTCATACTGTAGTTTGATACCTCTTTTTGTTTAATCAATTAGTGGAAGCATTGATAGCAATTAGAAAAGAACTGAATGACCCAAACGGAGCATTGAGCAATTGGGATGAAGATTCTGTTGATCCTTGTAGTTGGGCTATGATCACTTGCTCTTCTCAAAATTTAGTCATTGGCTTGTAGATATTGTTTACATTTTACTCCTTTAAATGCTTTTTAATCAGTAATCAAAATACAAAATTTACCTTTTTTTTTTTAATTTAGGGGTGCACCAAGCCAACGATTATCCGGAAAACTTTCAGGAGTAATTGGCAACCTTACCAATATCCAGCAAGTGTAAGAATTTTTCTGTTTTTCTGTATTTCTTCTTTCCTTGTATGAATTTTTTTCTCATTAATTTTTGTCATTTAGTTTATTACAGAACAATAACATAACAGGTGAAATTCCAGTGGAACTTGGATTGCTTCAGAAAATGCAGACTTTGGACCTCTCAAACAACAAAATTTCTGGAAAAATCCCAGATTCATTAGGGAACTTAACAAGTCTTCGGTATTTGTGAGTCTTTTAAAAGAATGTAAACATTATGTAATTTGCAATATTATTTCATACTTTTTCATTGTTACTCTCATTTATTCACAGGAGACTGAACAACAATAGTTTGAACGGTGCTTTTCCCGTGTCTTTATCAAAAATTCATCAGCTCACTTTCCTGTAATTATTTTTTATTTGTCCCAAGTATGGACTCCATTCCTATTTTAGCTGTAATTTTACGATTCCATGAAAATGTAGGGACTTGTCTTACAATAATCTCACTGGCCCAATTTCATTTTTTCCAGCAAAAACATTCAAGTAATTAAGTTACTTCGTCATATTTCATATCATTTTATTAACATTTACTGGAATAAAATTACTATAGTTTTTTCCCTTTTATTTAGTGCTGTTGGAAACCCGTTAATATGTGGAAATAAGACCACTGAAGAATGCTCAACAACTTCAATTCAGCCTTCTTTACCATTTTTATTGGATGTAAATCAGGGTAATCATCTTTTTTGTTTAGTAACTCAAAATATCTGTACGTTCTTATTAATGCTAATATCTTGATAATTCTATTATAGGGACACCGAAGACTAAGAAACTAGCAGTTGCTTTAGGATCTAGTCTCGGGGCAACCTTTATTCTACTACTATCAATTGGCCTCTTTCTATGGTGGAGGAAGAAGCAAAAGCACCACTCAATTCTTGGGTTCTTAGGTTTGCTTTTAATTCAGTTTTATTCTGTTTACTTAGCTGTGGGAATAAATGTGCTTTGTCTATAATGTTACTTTGTACAGGAAACTTTAAATTTCAGGATTAGGATTGCCAAAAAACAAATCACTAATTGGAATAATTATAATGTTTTTTAATTCATATATTGTAAAAGTAGCACAAAAAGTACTTATTGTAGGACCTTATGCTTTCAACTGGATATTATACTAAAAGAAAAGGAAAAAATGATTCTCTACATGGCTATCAAGTAATACAATTATATTTTCCATTTTTTTCATTCCGAAACTACAGAAAAATAAATATATAAAACGAGGGGTTACACATTCCATTTCTTATGAACCTCTTTAAGACTTTGTTTATCTAGAAATGTAGAAATAATATGACTTTTTTTTGTAGATATGATCAAATACTTTTCACTCTCATCGTCAAAATGTGTAATTCTAAATCATTTAAAAATATATAAGATCAAAGGTTACAAATAGATGTTTTTGAACTTATATGGTGAGGTTGTTTCCCTAAGTTTATATCGTCGGACAAAGTTATAATTTTCTTTAACTTATTCAAAATTATAAGTTAATAATAATATTTATTACAACAGTCGACTTTTTGTGTTTGGAGAGGGAAATAACGAGACAATGATCTTATTTTCCTCATAGATGATCATGGGATATTAAGAAATTTATTTGCTCGTTGTAGTTTATTATAACAGTTGACTTAAATATTATTGAACTGGCATACGCTAGAATAGAGCGTTAATTATTCAAACGTAACTCAGTTATATTGTTATTTATGATTTTGATTCACATTGCTGTATGGCTTGGTCTTTTGATATCACATTACAGTTTCAATCCTTGTTAGAAAAGCATTTGATAGTAGTAAAACTTCACATGAACACTACAACAAAGCCAAAATTATGTACCATATTCTCTACATTATTCATACAACAAATTCAAATAGGTGGAAACAATAAAAATAACACTTTTGCAGACAGAGAAGAAACAGAGTCAGCAACAGCAACAATCTCACTAGGCAACCTGCACCAATTCACAATCCGAGAACTACTAACAGCTACCGATAACTTCAACCCCAAAACCATTTTAGGCAAAGGAGGTTTTGGAAATGTTTACAAAGCCAAATTATCCAATGGTAACATAGTAGCAGTAAAACGTCTGAAAGACATGGGATCCACAGGCGAAGCCCAGTTCAAAACAGAAATTGAAATGATCAGTTTAGCTGTACATAGAAATCTTCTACCAATTATCGGATACTGCATCACTGAAAATGAACGTATACTGGTCTATCCGTATCTCATCAATGGTAGTGTTGCTTCAAGACTAAGAGGTATGTATACTTTTTTGGTTTGAAAAACACATTTTAGAGATGATTTTGACTGTAAGACACAACTTTTTATTTTCTGTTAAAAAGGAAACAGCCTAAAACAAATTGGTTTGTTCTTCTCCATTGATCTTCCGTGTCTATGTAGGTACCACTTTGTTTAAAAGCATGTTGTGACAACAACTTAAAACTAATTAATAGAGTTTTGAACTAAATTATTACTATTAATATGTTTGCCGACAACTTATAAAGAGGCGAAACAATTTGTTTTCAATTTGATAAGATGATTTATTTCAATTTTCACATTTATTTTTACTGTTGTTACTTTTTTTTTTCCTGGTTACAATTTCAACTTATTCACCCACACACTTCATGTTCTATCATTCACTTAAAGTACTTAAAATTTAATATTCAGATAATATTTTTATGTAGTTATAAAATAAGTTGTTCTCAAATGGCTCTAGCCTTGATCTAACTGGTCTTCTCCTTCTTTGAGTAAAACCAGAGTAGATAACTCTATGTATAGTATGATATTGTTACAGGTGTTTTATTTTATTTTTCATCAATATTTCTGTTTTTTTAACAATGGGAACAAAGCAGCAAAACCAGCATTAAACTGGAACACAAGGAAGAATATAGCACTAGGAACAGCAAGAGGATTGCTTTACTTGCACGAGCAATGTGAACCAAAGATCATTCATAGAGATGTCAAAGCTGCAAATGTGTTACTAGACGAGTCTTTTGAGGCAATAATTGGTGATTTCGGGCTGGCAAAATTGCTTGACCATAACGATTCTCATGTGACAACTGCAGTGCGTGGCACTGTCGGACATATTGCACCCGAGTATTTGTCTACTGGTCAGTCTTCAGATAAGACCGATGTCTTTGGGTTTGGCATATTGTTGCTTGAGCTTATTACTGGGCAGAGGGCTTTGCAATTTAGTATGGGAAGTCAGCAGAAAGGAGGAACTATTCTAGACTGGGTACCTACCTAATTTTTGAACTTCTCTTGTTTTATTGAAGCACAGTAGAGAAACACCAGCTAGATTTAGTTCAATCAGTGGTACATACCATAATAAATTCTGCTAAATGCATGTTTGTTATAAGCTATTAAATCAAGAACCTAATAACCTAGATCGGTTTTTTTCACTCTGGTCATTTGCTAGTGCAGAAGAGGATTTTTTTTTCCCCCTGTATTTTACAACTAATGTTATATGTGTTACGATGATTCACTTTTCAACGTCGGTGCATTTTAAGTTTTTAACAGACTTAATCTTGTTAATGTGCATCAACATTGGTTAAGATCATTAAGCCTTTGATCTAATGGTTTGTTTTTTCTGCTCTAGTTGTTAAAACCAGAATAAGTGATCATATTCGTGTTGATATCATCAATATTTTGTACTATGAAGGTGAAGAGAGTGCAACAAGAGAAGAAATTAGACTTAGCAGTGGATCGTGACCTTGGAAGCAACTACGATCGTATAGAAGTGGGGGAGATGATACAAGTGGCATTACTTTGCACTCAACATCTTCCATATAATCGACCAAAAATGTCTGAAGTGGTGAGAATGCTTCAAGGAGATGGACTAGCTGATAAATGGGAAGCTTCCAATAAAATACAATGTAATTATGCGTTAAGTGCTTGTAATCATGATAGGGAGCTTGATACATATCTTGTAATGAATGGGGCTGATTTTGATTTTGGTGGTGAATATGATTGCATTGATGGAGTTGAAGAGATGGAACTTTCAGGACCAAGATGACTGCAAAGGTTGTCATGAGCAACTAACATAAACTATCATATAGGTTAGTTGTTGTATATTATATTAGCATTCTTTTTTAGATATAGTTTCTTTTGGTGTGTTTAAAAATGAATGGTCGATTCCTCCCACTTTCATAATGACTTAACAGGCTTTATCTTTATTCGAGTGATTGTTTTTAGCTTTTCCATGTTGTAATCCAAGCGGGACCGACTACGGCTTGGTTAGGAATCAGTTTTGACCAGATTTAGAAGGCCAAAAGAGCCCTTGTTAATTCTGTTACATTTTGAATGAACGTGCAGGGCAATGGAGTAATTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020264800.1	7.8e-220	probable LRR receptor-like serine/threonine-protein kinase At2g23950 isoform X1
Swissprot	Q0WVM4.1	1.3e-171	Probable LRR receptor-like serine/threonine-protein kinase At2g23950
trEMBL	A0A5P1EUI4	5.6e-220	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G23950.1	65.06	0.0	763		Leucine-rich repeat protein kinase family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	bit score
g89424	AT2G23950.1	581	193	6	4	581	8	581	65.06	763
g89424	AT4G30520.1	578	196	4	5	581	14	585	64.88	751
g89424	AT5G16000.1	568	198	6	25	582	38	597	61.97	729

Ortholog group

Species	Genes
Allium cepa	g293382.t1; g89424.t1
Allium fistulosum	AfisC3G05214
Allium sativum	Asa2G04265.1
Arabidopsis thaliana	AT2G23950.1
Oryza sativa	LOC_Os08g34380.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF08263.9	LRRNT_2	Family	26	65	49.7	3e-13
PF13855.3	LRR_8	Repeat	117	176	37.1	1.8e-09
PF00069.22	Pkinase	Domain	301	565	148.3	2.4e-43

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005575	C	cellular_component
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0016020	C	membrane
GO:0003824	F	catalytic activity
GO:0004672	F	protein kinase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0004675	F	transmembrane receptor protein serine/threonine kinase activity
GO:0004713	F	protein tyrosine kinase activity
GO:0004888	F	transmembrane signaling receptor activity
GO:0007165	P	signal transduction
GO:0007178	P	transmembrane receptor protein serine/threonine kinase signaling pathway
GO:0005623	C	cell
GO:0006464	P	cellular protein modification process
GO:0006468	P	protein phosphorylation
GO:0006793	P	phosphorus metabolic process
GO:0006796	P	phosphate-containing compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0007154	P	cell communication
GO:0007166	P	cell surface receptor signaling pathway
GO:0007167	P	enzyme linked receptor protein signaling pathway
GO:0007275	P	multicellular organism development
GO:0007568	P	aging
GO:0008150	P	biological_process
GO:0009987	P	cellular process
GO:0010150	P	leaf senescence
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016740	F	transferase activity
GO:0016772	F	transferase activity, transferring phosphorus-containing groups
GO:0016773	F	phosphotransferase activity, alcohol group as acceptor
GO:0018108	P	peptidyl-tyrosine phosphorylation
GO:0018193	P	peptidyl-amino acid modification
GO:0018212	P	peptidyl-tyrosine modification
GO:0019199	F	transmembrane receptor protein kinase activity
GO:0019538	P	protein metabolic process
GO:0023052	P	signaling
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0036211	P	protein modification process
GO:0038023	F	signaling receptor activity
GO:0043170	P	macromolecule metabolic process
GO:0043412	P	macromolecule modification
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044464	C	cell part
GO:0048366	P	leaf development
GO:0048367	P	shoot system development
GO:0048731	P	system development
GO:0048827	P	phyllome development
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051716	P	cellular response to stimulus
GO:0060089	F	molecular transducer activity
GO:0065007	P	biological regulation
GO:0071704	P	organic substance metabolic process
GO:0071944	C	cell periphery
GO:0099402	P	plant organ development
GO:1901564	P	organonitrogen compound metabolic process
GO:0090693
GO:0140096

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network