result

Gene information

Detail information of g92518

Location

Gene	Chr	Start	End	Strand
g92518	Scaffold_37193:HRSCAF_395637	31036	33223	-

Sequences

CDS

Protein

Gene

>g92518.t1
ATGAAGAAAACCCAGAAAAACAGCAAACTTCTCGAATGCGCAACTCTAATCCTGCCATACCTCCCGCCACCAGCCCTCTCATCCCTCGCTGCCTCGTGTCGCACCCTCCGTTCCGTCATCATCACCGCCGATGCTTCCAGGAGCATCGAGAAATTTCCGATCCCTTTCATCAACTGCATCGACTCCGTTCCCTACTCTTCCTTTCTTTACACGAAGTCCTCGTTAGCTCCTAACAACATAATATTTGGCTCCGGGTGCGATTGTATGTCCAACTGCGATTCGGATCTGATAAACTGCAATTGTGTAGTGGGCGATGGTGGCAGTGAGTCTGGATTTGAAATGAAGAGGGAGTGTGGTGAGAAGTGCAGCTGTGGTTTGGATTGTGCGAATAGGATAACTCAGAGGGGGGTATCTGTGAAATTGAAGATTGTAAGGGTTGTTAATAAAGGCTGGGGATTGTTTGCTGCTGAATTTGTCAGGAAGGGAGGGTTCATCTGTGAATATGCAGGTATTCATTTGATTTTTGTTGCTAAAAGCTTTGGTTTCTGACATTTTTTCCGGATGAAGATTAACTGTTTGTTAAAATGCATCGCTAACTTTCAATTAATTATCAATGTTGTATTACTGGGGTTTGTAAGCGTTGGGATAACCAAGTCTGTATGCAGATTTTGAAGTACATGAAAAAAGCTCTAATTGTGTTGGTATAATGGATACTTGATTTGGAAAGCAGATACGTTTGAAGCATGTTTGACAATATCTTTGAAGCTGGAAAAACACCTTATAAGTTACATTTTTACTTGAAGTGTTGGAAAACAGCTTAACATTTTGACATAAAAATAACAAATAAGTTGACGAGTGATAGTATGAAAAACTTGTTTAATATTTTACAACCAACTTTTGTTGAAACTTCAGCTTATGCGTTGGAACACTTTTAATGTTTTGCTTTGTTTAAAACTATCTAAAAGTTATAATTCAAAACAACTTTTGAGCATGCTGTTGCCAAATAAGCTCTTATTTGCAACTTATTGTGCAGATATCGACTTATATGCAATTTTCTGAAAATGTGTTTGTGCCCTTTGTGAATTGTGTAAGCAGTTTGTTGCCTATGACTTAGCAGCAACTTTTAATAAAAGTAGCGTCTATGTTGTTCTAAAAGAAATAGCGGTTAAACATGCTCTCTAAGCATGTGCTATTCGAAATAGGGAAAAAAAATAAAGAATACGCCAGTCATTGTTATGCATATCATATATGTTATTTATTTGAACATTAAACAGGAAAAAAAAAAGACACTGCATGGTTGTCCAGTTGGCAATTAGGAGACTGAGTGATAAGAGTTTATGAGTTTGAGCTCGGTAACAGTACTAGAAAAAAAGTAAATATGATTGATTTTCTCGCAAGATAAAGTTACTGAAATGCAAAAATAATGACTTCGGTCTATTATTGTCAAAAATCTTAAAATCCTACAAATTAAATTCCGTTTCAAATCGAATCTCTCCCTTTATGGTTCGATTCATGTTCCGATTTAAACAGAGATAATACCACAATGTAGAAAAATCATTCAATCCAACAATCCATAGTTGCAACTCTAATGTTTTCTAAACAAAATAAAATCAGAACAAAAGAGAAAATGAAGTTTTAGGTTTAGATGTAGAAGTTTAAACATGGCATTCAATTTCAAAGTGTGTGCAAACCTTTAATGTGATTCATTTATCTCTACGGTCTACGATTTAAATTTCGTTTTGATCTAAAGTTTGAACTTTTTGATTTACGATTTGAATCTCATTTTGAAAACCTTGCAGGCGAATACCTAACAACGGAGGAATCAAGAAAGAGGCAAAAAGTGTATGATGAGCTTGCATCCAAGAAACTGCTATCTCCCGCACTAATAGTCATAAGAGAACACCTTCCATCTGGCAAATCATGTCTAAGGGCCAATATCGATGCAACCAAAATTGGAAATGTTGGTCGATTCATCAATCACTCTTGTGACGGTGGCAATTTGTCTGCTGTTTTGGTTAGAAATACCGGTTCGTTACTCCCCAGGCTGTGTTTTTTTGCCGCTCTTGATATAAATGATGGTTCAGAATTGACATTTAGCTATGGTGAGGGTAATGTGAGGTCAAATGGTTTGCCTTGTTTCTGCGGAAGTGGCGATTGTCGTGGTGTGCTGCCTTCTGAAGATACCTGA

Functional annotation

Database	accession number	e-value	annotation
nr	TVU34942.1	9.6e-91	hypothetical protein EJB05_16800, partial
Swissprot	Q9SRV2.4	3.0e-65	Suppressor of variegation 3-9-related protein 3
trEMBL	A0A5J9VF93	6.9e-91	Histone-lysine N-methyltransferase SUVR3 (Fragment)

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G03750.2	48.94	2e-77	285	SDG20;SUVR3	SET domain protein 20

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g92518	AT3G03750.2	331	125	7	9	298	27	354	48.94	2e-77	285
g92518	AT3G03750.1	331	122	8	9	298	27	338	45.02	3e-66	248
g92518	AT5G04940.2	311	173	11	23	291	362	667	29.26	2e-27	119

Ortholog group

Species	Genes
Allium cepa	g92518.t1
Allium fistulosum	AfisC8G04339
Allium sativum
Arabidopsis thaliana	AT3G03750.1; AT3G03750.2
Oryza sativa	LOC_Os01g56540.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF05033.13	Pre-SET	Family	46	131	32.1	1.3e-07
PF00856.25	SET	Family	150	271	58.6	9e-16

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K11433	SETMAR; [histone H3]-lysine36 N-dimethyltransferase SETMAR	EC:2.1.1.357	Lysine degradation	ko00310

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network