result

Gene information

Detail information of g94387

Location

Gene	Chr	Start	End	Strand
g94387	Scaffold_37442:HRSCAF_401414	710340	715590	+

Sequences

CDS

Protein

>g94387.t1
MSAPPSTPDPTPLEVPPWLKSLPLAPEYYPTLAEFQDPINYILKIEKEASTFGICKIIPPLPPPPKKTTLSNLNKSFAARNPKKEPTFTTRQQQIGFCPRRPRPVQKPVWQSGENYTLQQFEAKAKQFEKIQMKKFNKKNPFLPLEVESLFWRACADKPFSVEYANDIPGSGFAGNVKKWSKDEEAGNVGECGWNMRGVSRAKGSLLKYMKEEVPGVTSPMVYIAMMFSWFAWHVEDHELHSLNYLHFGAGKTWYGVPRDARQAFEEVVRVHGYGGEVNPLVTFTILGEKTTVMSPEVLIGAGIPCCRLVQNAGEFVVTFPGAYHCGFSHGYNCAEAANISTPGWLKVAKEAAIRRASVNYPPMVSHFQLLYALALSLCTGMPLVGVSEPRSSRLKDKMRGEGETMVKEIFVQTVIETNELLNALIDKGSSCIVLPQNTKDNLLYLHPNSKLNAKPKLSLDSCIHDEPVEVSRIIPSDLRTSDSISLEKEKEYMVHSDGLLDRGLLSCVTCGILSFTCVAIVQPSETAALYLLSADCGFLNNHTSDDGYKTPSSAGQLDIRASDRANQDVENGDHNQSAASALTLLASVYGDSSDSEEDTPQETSFFTSENSERNSLNTDDCDNMIKSRCESHIEAIQIEMLEDNEEERQDAEMGNMTYVSNAATENLPLAHIDTFRKNLSMLATSTIDKDSSRNHVFCLGHALEAEKLLHSIGGVSIMLLCHPDYPKIEEEARTIAEELENDYKWKDINFKEASEKDLERIRASLEDEESIPTSSDWAVKLGINLYYSASLSKSPLYSKQLPYNAVIYRSFGCSSSNDSPIDNKVPVRRKKIVVAGKWCGKVWMSNQVHPFLAQKQEEEHEKAKKIHYESDTDTNTKIFKTNVRNKRSIPKRNPSMKRKMQSLVKENVKKTKEMQVVESSSTSRVLRRNRKANPRYENKLDDDEMEEAQPSKSKTIVKKQVEKIKKKKKKIDILMKEDEDEENEGHFVCDIDQCSMSFRTKKDLALHKKDICPEEGCGKKFFCHKYLVQHRKVHLDDRPLGCPWKGCKMRFKWPWARTEHIRVHTGDRPYICRECSQTFRFVSDFSRHKRKTGHVSKKGRR*

Gene

>g94387.t1
ATGTCAGCTCCTCCTTCCACTCCAGACCCAACTCCACTAGAAGTTCCACCATGGTTGAAATCCCTTCCTCTAGCTCCAGAATACTATCCAACTCTTGCCGAATTCCAAGACCCAATCAATTACATTCTAAAAATAGAAAAAGAAGCTTCAACTTTCGGAATTTGCAAGATCATACCTCCTCTTCCTCCTCCTCCAAAAAAAACCACTCTTTCCAATCTCAACAAGTCTTTTGCAGCTAGAAATCCAAAAAAAGAACCAACTTTCACTACAAGGCAGCAGCAAATCGGGTTCTGTCCTCGCCGCCCACGACCCGTTCAGAAACCGGTATGGCAGAGTGGAGAAAACTACACATTGCAGCAGTTCGAGGCAAAAGCAAAGCAATTCGAGAAGATCCAGATGAAGAAGTTCAATAAAAAGAACCCTTTTTTGCCATTGGAGGTGGAATCTTTGTTCTGGAGAGCATGTGCTGATAAACCCTTTTCAGTAGAGTATGCAAATGACATACCTGGGTCAGGTTTTGCAGGAAATGTGAAGAAGTGGAGTAAAGACGAGGAAGCCGGTAATGTGGGTGAGTGTGGCTGGAACATGCGAGGTGTATCGAGGGCAAAAGGGTCGCTGTTGAAGTACATGAAGGAGGAAGTGCCAGGTGTTACTTCACCTATGGTTTACATTGCGATGATGTTCAGTTGGTTTGCTTGGCATGTCGAAGACCATGAGTTGCATAGTTTGAACTATTTGCATTTTGGTGCTGGTAAAACTTGGTATGGCGTGCCAAGAGATGCAAGGCAAGCCTTTGAAGAGGTGGTTAGAGTTCATGGATATGGAGGAGAGGTTAATCCTTTAGGTGAGTGCTTGATCATATTCTTAAATCTATTTATCAAATTGTGAAAATCAGTGACACTTCCCTTTTTCTAAGACTTATTTGTTTTACCTCTCTTTCTTTTTAAAACTATTTTATACACCTCTCTTTTTTATAATTCCTTCACGTTTACATCTCTTGTTTCCAAATTTAAGAGTATATGTCAAGACGTGTATTGCATGCCATTATGGTTATGAAAAATTGATAATATGAGAACATGTCATTGTTAGTAAAATTACCCAAATATCCCATGAAATACATCTATTTTTCCTGAAAATAGGAATGTATTTTATAATTATAACAATGTTTGTCAAAATTTCCCTTATCAATTCTTGCCCACGTGTATCAGATTACGATTTGGTAGGCTTTAATTGTGTTTACATAAATAACACTAAATGTGATCAAGCACTAATTGCAATAAGTGGTTTTTGATTAATGATGCCTTTTAAAAGTTAGGTAATTCAATACTGTTAATTACATCATAAAAACACATTATAAGCATAACATTTTAATTGAAAATAACTACAGTTAAAATTATTTAGCATTTTTGGCATGTTAGTTCAGTTGTCAATGCTGGTATTGTTACTATTGTAGATTTGTGCTCAAGAGATTTGAGTGCAACAGTGAGTTCATGAATCTACTTAGATATATAATGGATATATCACTTGGACAAAGATTTCTAAGTTTGATGGAGGTTTAAATTTTAAATATTTGGATGCATTAACCAAATATACTGTTATTAAATTAATATGAACTTGAACAGTAGTTTTCAGTATTGTGCAAGAAGCTATAATCAATCCAAATGACCTCCATTGATTTTGTGGCAGTAACTTTCACTATTCTTGGTGAGAAAACAACAGTCATGTCTCCTGAAGTTCTTATTGGTGCTGGAATTCCATGCTGCAGGTTACATCGCAGTATTAGGAAATTTGTTACTTCTATGATTAATTCCCATATTTTTTTTCTGATGAAATTTATGTAGTAAGAAGTAAATGTTTGTTAAAGCAGATTAGTCCAGAATGCTGGAGAATTTGTTGTCACGTTCCCTGGTGCTTATCATTGTGGATTCAGTCATGGTATGTTTCAGATCAGCTTTTACTTTTAGCCCAAAACTAGTATGATAATTCACATTATTAGTACAATTGAAATTTCTTTAATGGATTTTAGTATAAATAGAGATGCATGACTAGTTGTGTATTTATTTGATGTCTCGTGTGATTTCTGATTCTAGTCATTTTGTTGTACTGATAATAGGATACAATTGTGCTGAAGCAGCAAATATTTCAACACCTGGATGGTTGAAAGTAGCTAAAGAAGCTGCAATTCGAAGAGCATCGGTTAATTACCCCCCTATGGTCTCTCATTTTCAGTTACTTTATGCTCTTGCATTATCATTGTGCACAGGGTATTTAGACTTTCTCTTTTACGATATCAGTTAATATTAATCTTGCATGTAGCATAGATATTCTTTGACATAATACACACAGTCATGGAAATGTGTCAATTTTAAATTAGTTGATTGATTTTATTTCGTCGAGGTTTTAATTTTGAGACTTTGCACATATAAAATTGAACAGGTGCCTGCACCAAATTTTATTCGAATTTCTCATTCAGCTAATGTTAAGACATCGAATGTAATATTCAGTTTATTTACCAGGATGCCACTGGTTGGTGTTTCTGAGCCACGTAGTTCTAGACTGAAGGATAAGATGAGGGGTGAAGGTGAAACAATGGTTAAGGAAATATTTGTACAAACCGTTATTGAAACCAATGAACTACTGAATGCTCTAATCGACAAAGGATCATCTTGCATAGTTCTCCCACAAAATACCAAAGATAACCTTTTATACCTACATCCAAATTCTAAGCTAAATGCAAAGCCCAAGTTATCACTAGACTCATGTATCCATGATGAACCTGTAGAAGTTTCCAGAATTATACCTTCAGATTTAAGAACGAGCGATTCAATTTCATTGGAAAAAGAGAAAGAATATATGGTACATAGTGATGGTTTGTTAGACAGAGGATTATTATCCTGTGTTACATGTGGAATATTGAGCTTTACATGTGTGGCAATTGTTCAACCAAGCGAAACAGCTGCTTTGTATCTCCTGTCTGCTGATTGTGGTTTTCTTAATAATCATACTAGCGATGACGGCTACAAAACACCGTCTTCTGGTATGTCTTCGTTACATGCTGTTTCTTTAAATATGCATGTATAAAAATCTTTTACATCATTCAAATATATGTCTATGCTTTGTGGTTTGTTTCCCGTTTTCATATTACTCTTCCTACAAAAGCCATGTGAACAGTTTAAAATTTATTTTAATTCTTCCATGAGATTTTCTTTTTCTGCCTAGCTCAAATAACTAACTCAGGATAGTTGTGCACGGACATCAAAACACATATTTCAGGTTATTCAATGAGGTTTACACTGTCATACTATGGTATTGATTTGACTCTTGCATATGAGCTACCCTTTGGAGTACTGTTTTCCTTTCATAGAAACAAATATAAGCGCACATTTTTGTTTTGCCTAACATATCTGTTTATTCAGCTGGACAACTGGATATTCGTGCGAGCGATAGAGCCAATCAAGATGTCGAAAATGGTGACCATAACCAGAGTGCTGCCTCAGCTCTTACACTTCTAGCTTCTGTTTATGGAGATTCATCCGACTCTGAAGAGGATACACCTCAAGAAACATCTTTTTTTACCAGTGAAAATTCTGAACGCAATTCTTTAAACACTGATGATTGTGATAATATGATCAAATCAAGATGTGAAAGTCACATTGAAGCAATTCAAATTGAAATGTTAGAGGACAATGAAGAAGAAAGACAGGATGCAGAAATGGGAAATATGACTTATGTTTCAAATGCAGCGACTGAAAATTTGCCATTAGCCCATATCGATACATTCAGAAAGAATTTATCAATGTTAGCTACTTCGACAATTGACAAGGATTCTTCTCGAAATCACGTGTTTTGTCTTGGACATGCTCTAGAAGCCGAGAAGCTACTTCATAGCATAGGCGGTGTGAGCATTATGCTTTTATGCCATCCAGGTCAGTGATTCTTCTATAGATACGTAAACATAATAATGAATTCGTAACTGTACCACTGATATAATTCATTGGCAATGGAAACCTCCAGTTAAATATTTAAAATGGTACAGAACTACAGAATCAGATAGCTCATATGTAATTGTCTATTCTATTGTGAGTTGAAATCTTATGACAAAAACGTTTTCATAGATTATCCCAAAATTGAAGAGGAAGCACGAACAATAGCCGAAGAACTAGAAAACGATTATAAGTGGAAGGACATTAATTTCAAAGAAGCTTCAGAGAAAGATCTTGAGAGAATTCGAGCATCGCTTGAAGACGAAGAATCCATCCCCACAAGCAGTGACTGGGCAGTAAAATTAGGCATTAATCTTTATTACAGTGCAAGCCTGAGCAAATCTCCGCTCTACAGTAAACAGCTACCTTATAATGCAGTCATATATCGATCGTTTGGTTGTAGTTCTTCAAACGATTCTCCTATTGATAATAAGGTACCTGTTAGGCGCAAAAAAATTGTTGTTGCTGGAAAGTGGTGTGGAAAAGTATGGATGTCAAATCAAGTTCATCCATTTCTTGCTCAAAAACAAGAAGAGGAGCATGAAAAAGCAAAGAAAATACACTATGAAAGTGATACCGACACAAATACAAAAATATTTAAAACTAACGTAAGAAACAAGAGAAGCATACCTAAGAGAAACCCATCTATGAAAAGGAAAATGCAGTCATTGGTTAAGGAAAACGTCAAGAAAACAAAAGAAATGCAAGTGGTTGAAAGTAGCAGTACATCAAGAGTTCTTCGTAGAAACCGTAAAGCAAACCCAAGATATGAAAATAAATTAGATGATGATGAGATGGAAGAAGCACAACCATCAAAGTCAAAAACAATAGTCAAAAAGCAAGTTGAGAAGATAAAGAAGAAGAAGAAGAAAATTGACATATTGATGAAAGAAGATGAAGATGAAGAGAATGAAGGACACTTTGTATGTGATATAGATCAATGTAGCATGAGCTTTCGCACAAAAAAGGACCTAGCTTTACATAAGAAAGATATATGTCCAGAAGAAGGATGTGGGAAGAAGTTCTTCTGCCATAAGTACTTGGTTCAGCATAGAAAAGTTCATTTGGACGATCGACCTCTAGGGTGCCCTTGGAAAGGGTGTAAAATGAGGTTCAAATGGCCTTGGGCTAGGACTGAGCATATTCGAGTTCATACTGGCGACCGCCCTTACATTTGTCGTGAATGCAGTCAAACTTTTCGGTTTGTTTCCGATTTCAGTCGTCATAAAAGGAAGACTGGTCATGTCTCCAAGAAAGGCAGGAGATAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008797141.1	0.0e+00	LOW QUALITY PROTEIN: lysine-specific demethylase JMJ705-like
Swissprot	Q5N712.1	4.0e-256	Protein JUMONJI 705
trEMBL	A0A8B7CE74	0.0e+00	LOW QUALITY PROTEIN: lysine-specific demethylase REF6-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G48430.1	49.38	0.0	848	JMJ12;REF6	relative of early flowering 6

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g94387	AT3G48430.1	968	387	18	14	903	9	951	49.38	0.0	848
g94387	AT3G48430.1	114	31	1	988	1099	1243	1356	71.05	5e-49	193
g94387	AT5G04240.1	611	254	9	13	528	4	611	42.39	8e-131	465

Ortholog group

Species	Genes
Allium cepa	g94387.t1
Allium fistulosum	AfisC1G04572
Allium sativum	Asa7G04381.1
Arabidopsis thaliana	AT3G48430.1
Oryza sativa	LOC_Os01g67970.1; LOC_Os12g18150.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02375.14	JmjN	Family	26	59	49.4	2.9e-13
PF02373.19	JmjC	Domain	221	340	127.2	3.6e-37

Gene Ontology

Accession	Ontology	Name
GO:0051276	P	chromosome organization
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0003824	F	catalytic activity
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0016570	P	histone modification
GO:0006325	P	chromatin organization
GO:0006464	P	cellular protein modification process
GO:0006482	P	protein demethylation
GO:0006807	P	nitrogen compound metabolic process
GO:0006996	P	organelle organization
GO:0008150	P	biological_process
GO:0008214	P	protein dealkylation
GO:0009893	P	positive regulation of metabolic process
GO:0009987	P	cellular process
GO:0010468	P	regulation of gene expression
GO:0010604	P	positive regulation of macromolecule metabolic process
GO:0010628	P	positive regulation of gene expression
GO:0016043	P	cellular component organization
GO:0016569	P	covalent chromatin modification
GO:0016577	P	histone demethylation
GO:0019222	P	regulation of metabolic process
GO:0019538	P	protein metabolic process
GO:0032451	F	demethylase activity
GO:0032452	F	histone demethylase activity
GO:0036211	P	protein modification process
GO:0040008	P	regulation of growth
GO:0040009	P	regulation of growth rate
GO:0040010	P	positive regulation of growth rate
GO:0040029	P	regulation of gene expression, epigenetic
GO:0043170	P	macromolecule metabolic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043412	P	macromolecule modification
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0045815	P	positive regulation of gene expression, epigenetic
GO:0045927	P	positive regulation of growth
GO:0048518	P	positive regulation of biological process
GO:0050789	P	regulation of biological process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0070076	P	histone lysine demethylation
GO:0070988	P	demethylation
GO:0071557	P	histone H3-K27 demethylation
GO:0071558	F	histone demethylase activity (H3-K27 specific)
GO:0071704	P	organic substance metabolic process
GO:0071840	P	cellular component organization or biogenesis
GO:1901564	P	organonitrogen compound metabolic process
GO:0140096

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network