result

Gene information

Detail information of g95196

Location

Gene	Chr	Start	End	Strand
g95196	CHR5	218075521	218078487	-

Sequences

CDS

>g95196.t1
ATGGACATGCATGTGCAGCCCATAGACAACTTAGAAAATGCCAAATACCAAGTTGCCAATGTGAACAAGGATAAGATGGGATCATATAATTCAACTAATTCTGCGTCAAATTTTTTGAAACTCAATCAGACATTACTTATGCACGAACCCTTATCGGATCTTCGAACCAACGAATACTCACCTCCAAGCTCAAAATCCATGTCTAGAAAAACCACCTTCCTCTTTATTCTCCTTCCTATTTTCCTGACCTCCACCCTCTCTCAACAAGACTCATTCATCTACAATGGCTTCAATTCACCAGCAACAAATTTGAGCTTAAACGGTATAGCAGAAATTGAACCCTCAGGCATATTGAAGGTCACTAATGAAACAAGCAGACTTCTCGGCCATGCTTTCTATCCAAACCCCATCACATTCAAAACCTCCAACAGTTCTTCCTCGCTCTCCTTCTCAACTTCCTTCGTCTTTGCTGTAGTCCCTGAATACCCAAAACTCGGCGGCCATGGTTTCGCTTTCGTCATCTCTCCCACCAAAGAGTTGGCCGGAGCGCAACCCAGCCAGTATTTAGGTATTTTTAACGCGAGCGACGTCAGCAACGTCACAGATCACAAATTCGCCATCGAGTTTGACACAGTGCAAGATTTCGAATTCTTCGACATAAACGACAATCACATCGGTGTCGACATCAACAATCTAATCTCCAACAAATCCGTCGCCGCCGCCTACTTCGACGACGACGGTCAGAAGCAGGATCTGAACCTCAAAAGTGGCGACAGAATCCAAGCATGGGTAGACTACGACGGCGTCAATAAAATCCTCAACGTCACGATTTCGCCTTTCTCGAAAAAACCTAACATTCCCATAATTTCGTATCAAGTAGATCTATCTCCAATTTTGCAAAACAAAATGTACGTTGGATTTTCCGCTTCAACCGGCTTGCTTGCAAGCTCTCACTACTTAATGGGCTGGAGCTTCGCGTTAAACAAACCCGCTATGGCTTTAGAAATGTCATCTTTGCCCTCCTTACCAAAACCTAAAAGGACACACACCGTCTTCACAATCATAATGTCATCCGCGGCTTTCTTCGTATTCCTCCTCGCAATCGCAGCAGCAGGCTACATCTACTACAAAATAAAAAACGCAGACATAATCGAACCGTGGGAATTCGAGTACGGCCCGCACAGATTCTCGTACACGGAGCTCAAACGCGCTACGAAAAGCTTCCGGGACAAAGAATTACTAGGAAGCGGCGGATTCGGTAAGGTGTACAAAGGAGTTCTTCCGAACACCAAAACCGAAGTCGCCGTGAAAAGAGTCGCGCACGGATCGAAACAGGGGTTACGGGAATTCGTGGCGGAAATCGCCAGCATCGGACGCTTGCGTCACAGAAATTTAGTTCGCCTCCAAGGCTGGTGCAGGCGTCGCTCCGACCTGCTGCTCGTGTACGATTACATGGAAAACGGCAGCCTCGACAAATTCTTGTTTCAAGACGGGCCGAGTTCGAGCCCTACCCAAAGCCCAACCCCAAACCTAAAGCATCCCGTGTTTGTTCTTTCGTGGGGCCAAAGGTTTAAAATAATAAAAGACGTGGCGTCAGCTTTGTTATACCTTCACGAGGAATGGGAACACGTGGTGATCCACAGAGACGTGAAGGCTAGTAACGTGTTGCTTGATTCAGAATTGAAAGGCAGACTAGGCGATTTCGGGCTGGCTAAACTGTACGAGCACGGGGCTAACCCGAGCACGACACGGGTGGTGGGTACGTTGGGCTATTTGGCGCCCGAACTGACCCGGACCGGGAAGGCGACGACTAGCTCGGACGTGTTTGCGTTCGGGGCATTGGTGTTGGAAATAGTGTGCGGGCGGAGGCCCATAGAGCCCAAAGCGAACCCCGATGAGTTGGTGCTGGTGGATTGGGTATGGGAGAAGTACAGTACTGGTAAGTGGGTGGAGGCGCTGGACCCGAAGATGGACGGGTGCGAGTTGGTGGAGGCGGAGGTGGCGATGCGGGTCGGGTTGATATGTTCGCACCCGGTAGGTGGGGTGAGGCCGAGCATGAGGGAGGTGGTGAGGTACTTGGACGGTGGGGATGTGCTGGAGGTGCCGGTGGTGAAAATGCCACCGAGCGAGTATGAAGGGGTGGCTAAGAGCGGGCTCGGGTTTGAGGATTTTGTTCATTCGTACCCGTCATCTTCGTTCGAGAAGTTGGAGGAGGAAGGAGAGGGAACGGGTGGGGATCGGAGTTTGATTGGTGGTATGTTTAAGTATTCTCCTATGTCGTTGTTGTCACGTAGCAATGTGTAA

Protein

Gene

>g95196.t1
ATGGACATGCATGTGCAGCCCATAGACAACTTAGAAAATGCCAAATACCAAGTTGCCAATGTGAACAAGGATAAGATGGGATCATATAATTCAACTAATTCTGCGGTAACGATCCATTCCACTACAGCTGACTCAATATAGCAGTAAACTTCTTAGCATGGTTTTTCCTTTTACCCTTTTTTTGTTTTTCCAGTCAAATTTTTTGAAACTCAATCAGACATTACTTATGCACGAACCCTTATCGGATCTTCGAACCAACGGTTAAATCGTCAATTTTATCTGATTGAACCGTGTTTCTTTTTATAATAATATTCTTTTATTTTCATCTTTTGTATTACTTTGAAAAAAAACAAGTAACTCTATAATCCAAAAATCATAATCGTTTAAAAATCTAAACGACAAATTCAACTACTTCATTGTTCACTGCCGCAAACTCTTCCACAATCACGGTAAGATTCGTCAAGTTTGCTATCATTTACAGCTCGTGTATATGTTATTATTATTTTAATATTTTTGTGTATAGTTTTTATTTAAATTCGATTGAATCATTCCAACCTAAAACTTTGATCATTACCGTCTAGTTACGAATCTATAACAGATAATGCGCATTATATGATTTATATCATCACTCGATAAGAAAAATATGCGAACTTTAAAAGTTTATATCACTTCGCAAATAAAAGTTCAATAATCTGACGAATCTTTGCATATTGCGTTTTGACGTACATAGGATAATATTTGTCATGCTGTTGTATCATCATCAGAACACTAGTCCTGTCACTTTCCGTTTTGTCTATAAATCTATAATTGCTCTCCAGCTAAAATCAACCAAAAGAATACTCACCTCCAAGCTCAAAATCCATGTCTAGAAAAACCACCTTCCTCTTTATTCTCCTTCCTATTTTCCTGACCTCCACCCTCTCTCAACAAGACTCATTCATCTACAATGGCTTCAATTCACCAGCAACAAATTTGAGCTTAAACGGTATAGCAGAAATTGAACCCTCAGGCATATTGAAGGTCACTAATGAAACAAGCAGACTTCTCGGCCATGCTTTCTATCCAAACCCCATCACATTCAAAACCTCCAACAGTTCTTCCTCGCTCTCCTTCTCAACTTCCTTCGTCTTTGCTGTAGTCCCTGAATACCCAAAACTCGGCGGCCATGGTTTCGCTTTCGTCATCTCTCCCACCAAAGAGTTGGCCGGAGCGCAACCCAGCCAGTATTTAGGTATTTTTAACGCGAGCGACGTCAGCAACGTCACAGATCACAAATTCGCCATCGAGTTTGACACAGTGCAAGATTTCGAATTCTTCGACATAAACGACAATCACATCGGTGTCGACATCAACAATCTAATCTCCAACAAATCCGTCGCCGCCGCCTACTTCGACGACGACGGTCAGAAGCAGGATCTGAACCTCAAAAGTGGCGACAGAATCCAAGCATGGGTAGACTACGACGGCGTCAATAAAATCCTCAACGTCACGATTTCGCCTTTCTCGAAAAAACCTAACATTCCCATAATTTCGTATCAAGTAGATCTATCTCCAATTTTGCAAAACAAAATGTACGTTGGATTTTCCGCTTCAACCGGCTTGCTTGCAAGCTCTCACTACTTAATGGGCTGGAGCTTCGCGTTAAACAAACCCGCTATGGCTTTAGAAATGTCATCTTTGCCCTCCTTACCAAAACCTAAAAGGACACACACCGTCTTCACAATCATAATGTCATCCGCGGCTTTCTTCGTATTCCTCCTCGCAATCGCAGCAGCAGGCTACATCTACTACAAAATAAAAAACGCAGACATAATCGAACCGTGGGAATTCGAGTACGGCCCGCACAGATTCTCGTACACGGAGCTCAAACGCGCTACGAAAAGCTTCCGGGACAAAGAATTACTAGGAAGCGGCGGATTCGGTAAGGTGTACAAAGGAGTTCTTCCGAACACCAAAACCGAAGTCGCCGTGAAAAGAGTCGCGCACGGATCGAAACAGGGGTTACGGGAATTCGTGGCGGAAATCGCCAGCATCGGACGCTTGCGTCACAGAAATTTAGTTCGCCTCCAAGGCTGGTGCAGGCGTCGCTCCGACCTGCTGCTCGTGTACGATTACATGGAAAACGGCAGCCTCGACAAATTCTTGTTTCAAGACGGGCCGAGTTCGAGCCCTACCCAAAGCCCAACCCCAAACCTAAAGCATCCCGTGTTTGTTCTTTCGTGGGGCCAAAGGTTTAAAATAATAAAAGACGTGGCGTCAGCTTTGTTATACCTTCACGAGGAATGGGAACACGTGGTGATCCACAGAGACGTGAAGGCTAGTAACGTGTTGCTTGATTCAGAATTGAAAGGCAGACTAGGCGATTTCGGGCTGGCTAAACTGTACGAGCACGGGGCTAACCCGAGCACGACACGGGTGGTGGGTACGTTGGGCTATTTGGCGCCCGAACTGACCCGGACCGGGAAGGCGACGACTAGCTCGGACGTGTTTGCGTTCGGGGCATTGGTGTTGGAAATAGTGTGCGGGCGGAGGCCCATAGAGCCCAAAGCGAACCCCGATGAGTTGGTGCTGGTGGATTGGGTATGGGAGAAGTACAGTACTGGTAAGTGGGTGGAGGCGCTGGACCCGAAGATGGACGGGTGCGAGTTGGTGGAGGCGGAGGTGGCGATGCGGGTCGGGTTGATATGTTCGCACCCGGTAGGTGGGGTGAGGCCGAGCATGAGGGAGGTGGTGAGGTACTTGGACGGTGGGGATGTGCTGGAGGTGCCGGTGGTGAAAATGCCACCGAGCGAGTATGAAGGGGTGGCTAAGAGCGGGCTCGGGTTTGAGGATTTTGTTCATTCGTACCCGTCATCTTCGTTCGAGAAGTTGGAGGAGGAAGGAGAGGGAACGGGTGGGGATCGGAGTTTGATTGGTGGTATGTTTAAGTATTCTCCTATGTCGTTGTTGTCACGTAGCAATGTGTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_009416157.2	2.2e-264	PREDICTED: L-type lectin-domain containing receptor kinase S.4-like
Swissprot	Q9M2S4.1	1.8e-199	L-type lectin-domain containing receptor kinase S.4
trEMBL	A0A804KFH2	1.6e-264	(wild Malaysian banana) hypothetical protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G55550.1	55.57	0.0	706	LecRK-S.4	Concanavalin A-like lectin protein kinase family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g95196	AT3G55550.1	619	249	6	83	694	19	618	55.57	0.0	706
g95196	AT3G53810.1	616	264	6	87	695	22	621	53.41	0.0	643
g95196	AT2G37710.1	679	299	11	87	752	22	674	50.22	3e-180	629

Ortholog group

Species	Genes
Allium cepa	g95196.t1; g96527.t1
Allium fistulosum	AfisC3G07175; AfisC5G04310
Allium sativum	Asa0G01862.1; Asa2G05965.1; Asa6G04582.1
Arabidopsis thaliana	AT2G37710.1; AT3G53810.1; AT3G55550.1; AT4G02420.1
Oryza sativa	LOC_Os02g19530.1; LOC_Os02g42780.1; LOC_Os07g03780.1; LOC_Os07g03790.1; LOC_Os07g03810.1; LOC_Os07g03820.1; LOC_Os07g03830.1; LOC_Os07g03860.1; LOC_Os07g03870.1; LOC_Os07g03880.1; LOC_Os07g03950.1; LOC_Os07g03970.1; LOC_Os07g04000.1; LOC_Os07g04010.1; LOC_Os07g18230.1; LOC_Os07g18240.1; LOC_Os07g38800.1; LOC_Os07g38810.1; LOC_Os07g38820.1; LOC_Os09g09500.1; LOC_Os10g30530.1; LOC_Os10g30540.1; LOC_Os12g38610.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00139.16	Lectin_legB	Domain	90	340	262.2	4.3e-78
PF00069.22	Pkinase	Domain	409	628	153.9	4.6e-45

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005575	C	cellular_component
GO:0002229	P	defense response to oomycetes
GO:0002239	P	response to oomycetes
GO:0016020	C	membrane
GO:0006952	P	defense response
GO:0042742	P	defense response to bacterium
GO:0005623	C	cell
GO:0006950	P	response to stress
GO:0008150	P	biological_process
GO:0009605	P	response to external stimulus
GO:0009607	P	response to biotic stimulus
GO:0051707	P	response to other organism
GO:0009617	P	response to bacterium
GO:0043207	P	response to external biotic stimulus
GO:0044464	C	cell part
GO:0050896	P	response to stimulus
GO:0051704	P	multi-organism process
GO:0071944	C	cell periphery
GO:0098542	P	defense response to other organism

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network