result

Gene information

Detail information of g97562

Location

Gene	Chr	Start	End	Strand
g97562	Scaffold_37834:HRSCAF_411516	308553	311892	-

Sequences

CDS

Protein

Gene

>g97562.t1
ATGCATGCTACTGTTCCACCGGCACATGAAGGTAATTCAGTCACTACCACAAGGCCCAGGAGAATGATACAATTGCCTAAAAGATTCTTGAACTGGAAGAAATGTAAGAGGCTGCAAGTTGTTACAAATGTCAGACGTGTATTTTCTTTTTTTTCTGTTATTTGGTTTTAATGTTAAAAAGTTGTTACAGTAGGGGCTCCTAGCATGTTATGTGGAAAAGTTTGTTAGTGGTATTGCTATTTATGTACGAGAATCAGATCTGAAAAAAAAGAAGAGAAAGTTAATTCTAAAACTTCTTACAGTATCTCCTTCTTCTCAATTCAATTTTCTCTTCTATATTCCTCTGTTCTTCCTCTGCCTATACTCCACATCCTTATCATTTGGTCTCACTGATCTCCTCTCCTCCCTCTCTCCTAAAACTTCACCTCTGTTCTCCCCTCCTTTCCTTTCCTAAATATCCAACAAAACTCCATCACCATGACCAAACTCGATGATGCGCTGCAGCAACTCAACCAACATAATGAAGCCATCACCACAATACAAGAAAACCAGACCAACCATAGCTCCATGCTTGAAACTCTAACAGCCGACAACATTGACATCAAAACTGCTCTTCAAGATCTCTCCACACAAATAACCAACATCAACCGCAAGCTAGACAACCAACAAACTTTGTCACCAACTCACCACACATCAACAACATATCAGCCATCACCTCCAAACCGACAACCGCCGCTATTAGCAACACCAACACCCACGTGAACTCCTAAATTTTCTCTAACTACATTCGATGGATCCAACCCACACGATTGGATATTTCAAGCGGATCGATTCTTCGCCTACTATTCAACACCGGAAGACCAACGAGTTGATCTAGCAAGTTTCCACATGCATGGCCAAGCTCTCGCATGGTTTCAATGGATGCATCGCAACAATCAAATCTCTACTTGGATAGCATTGACAAAAGCGATCGAGAAGCGCTTTCGGACCACCTACATTTCTTAACCCACAAGCCACCTTGTTCAAACTCCAGCAACTTACCACTGTCGACAATTACCAAGCCACCTTTGAAAACCTTTGCAACCGTATTAATACACTTTCCAATGACACCATACTCCAATGCTTCATTTCCGGCCTCAAAATACATATACAAAACGAACTCCACATCCTCAAACCCACCACCATCTCCGATGTGATAGAAGGCGCTAAACTCATCGAACGTAAGTACACTGACCCTCCCAAACCAATATCCACTGAATATACCAATTCTCACTTCTAGAAACCAACAGACAACCAGCATACCTCTCAGACAATTCCACAAACACCTCCCATGCAACCCTCCAAACCCAGTATTCCTATCAAATAACTCTCCCTGTCGGAGATGCATGCACCTAAACAACAAGGTTTATGTTTCAATTGCAATGAGAAATACTACATCGGCCATCGTTGTAAACCCACTCACCTCTTGATGATCCTTCCCGAATTCAACCCGGACAATGACATTCCAGAACACGACCCAGAACAACCATCAGTCACCACTTCCACTAACTCCTTATTGCCGTGACCTTGAGGGCAAGGTCGATCTTGAAGGGGTAGGTGTTGATACGACCACTAGTGATAGTATGCATGCTACTGTTCCACCGGCATATGAAGGTAATTCAGTCACTACCACAAGGCCCAGGAGAATGATACAATTGCCTAAAAGATTCTTGAACTAGAAGAAATGTAAGAGGCTGCAAGTTGTTACAAATGTCAGACGTGTATTTTCTTTTTTTCTGTTATTTTGTTTTAACGCTAAAAAGTTGTTAAAGTAGGGGCTCCTAGCACGCTACGTGGAAAAGTTTGTTAGTGGTATTGCTATTTATGTAAGATCTGATCTGAAAAAAGAAGAGAAAGTTAATTCTAAAACTTCTTACAATATCTCCTTCTTCTCAATTCAATTTTCTCTTCTATATTCCTCTGTTCTTCCTCTGCTATACTCCAGATCCTTATCATCGGTCTTGCTGCCAATTGTCTTTTAAAATATGTATAGCGCAAAATCTACTTACCCGTTTTTTCCAAATAAACTTTAACCTTAAACAGTCCGAGGTTCATTTTACGCAATTTATTTAATCATGTAGTTTTCAGTCTCAGTTCAGAGTTTTGCCTGTAACTTTACCTGTTGCTTTCCTAATGTAAAGTTTCATGAAATTAAAATACATATCATGTAATTTATTACTGACAATGTTATATTTGCAGAAGAAGCCTGTCTTGTATCTTAAAACAAGACGTACTTTTCTTATTAAATGAAAGAATCTTTGAGTTGATTTTTGCAGCCAGCATGATATAACTAATATTGTTTTCTTTCTTAAGAAAACAACATTATTTAAAATCTTCGGTAAGCAAATGAGTTCTTAAGAACCAAGATAGTTATTAACTTACTATACTATAAATGTCCTAACCATACCATACATGTTCATATGAGTTAAAAAAAATAAAAATGGGTTGCAAGAACTGCGTGAAAAAGAAAAGCATGACTAATAGAAAGGGATTATGGTCACCAGACGAAGATCAAAAGTTAAGAGATTATGTCTTAAATTATGGCCATGCCTCCTAGGCTTCAGTTGCTACTAATGCTGTTATAGATTTTCTCCCTTGTTAATTTTCTTTCAAAACTAAGTTAAACTGCACTTGATCTGCAAACTCGTAAATAGTATAAAATTGTGTATTTTATTTTAGGGTTGCAAAGAAATGGAAAGAGTTGTAGGTTAAGATGGGTCAACTATTTGAGGCCTGGGCTGAAGCATGGCGGCGGATTTACCCTGGAAGAAGAGCAAACAATTATTTGCCTTCATGGTGTTCTAGGGAACAAGTATATATACACTGATTTTTCTTTTCTTTTCTTTTTTCTTTTTATTTGCTTCCTGGAAACTCTGTCTACAAATTATAATTTGGTTTCAACGTCCATAGGTGGTCGCTGATAGCAATGCAACTGCCAGGGAGGACAGACAATGAAATAAAGAATTACTGGAATTCCTACTTAAAAAAGAAGACCAGCCCTGGAGTTAACAATGTTAATGACGTATTATTATCGTCATCCTCCTCCCCTTTGTCATCCTTGAATTTGCAAACTTCTGTATTTCCCAAAGTTACGTTTGCAGAATGGATGCCTAACGAGCATAATAGTAATAATGCAATGATAAACTGCGATTTGGAGAAAGATGATCAGGCTGTTAACGATAATGTAGAAATTAATGAAGGGTTTTTTCAAGGGTTCGGAGATGATAATATTTGCCAAGATTTCCATTTTGGGTATGAAGATATTCTACAGGATGGGATTTTTGATCTTTTTTTGCCTTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008794566.1	1.8e-32	transcription factor LAF1-like
Swissprot	O49608.1	3.5e-25	Myb-related protein 32
trEMBL	A0A8B7C9S7	1.3e-32	transcription factor LAF1-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G15310.1	51.59	5e-26	114	ATMIXTA;ATMYB16;MYB16	myb domain protein 16

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g97562	AT5G52260.1	109	36	3	87	190	46	153	61.47	4e-26	114
g97562	AT5G15310.1	126	57	3	71	195	30	152	51.59	5e-26	114
g97562	AT5G15310.2	126	57	3	71	195	30	152	51.59	6e-26	114

Ortholog group

Species	Genes
Allium cepa	g252333.t1; g253134.t1; g419348.t1; g97562.t1
Allium fistulosum	AfisC8G03401; AfisC8G03402; AfisC8G03420; AfisC8G03425
Allium sativum	Asa1G01862.1; Asa1G01864.1; Asa6G03023.1; Asa6G03024.1
Arabidopsis thaliana	AT4G25560.1; AT5G52260.1
Oryza sativa	LOC_Os02g42850.2; LOC_Os04g45020.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	110	154	52.1	4.8e-14

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0000988	F	transcription factor activity, protein binding
GO:0000989	F	transcription factor activity, transcription factor binding
GO:0001067	F	regulatory region nucleic acid binding
GO:0001076	F	transcription factor activity, RNA polymerase II transcription factor binding
GO:0001101	P	response to acid chemical
GO:0001134	F	transcription factor activity, transcription factor recruiting
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0007165	P	signal transduction
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0007154	P	cell communication
GO:0008150	P	biological_process
GO:0009314	P	response to radiation
GO:0042493	P	response to drug
GO:0009416	P	response to light stimulus
GO:0009628	P	response to abiotic stimulus
GO:0009639	P	response to red or far red light
GO:0009719	P	response to endogenous stimulus
GO:0009725	P	response to hormone
GO:0009751	P	response to salicylic acid
GO:0009889	P	regulation of biosynthetic process
GO:0009891	P	positive regulation of biosynthetic process
GO:0009893	P	positive regulation of metabolic process
GO:0009987	P	cellular process
GO:0010017	P	red or far-red light signaling pathway
GO:0010018	P	far-red light signaling pathway
GO:0010033	P	response to organic substance
GO:0010218	P	response to far red light
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0010557	P	positive regulation of macromolecule biosynthetic process
GO:0010604	P	positive regulation of macromolecule metabolic process
GO:0010628	P	positive regulation of gene expression
GO:0044212	F	transcription regulatory region DNA binding
GO:0014070	P	response to organic cyclic compound
GO:0045935	P	positive regulation of nucleobase-containing compound metabolic process
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0046677	P	response to antibiotic
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0023052	P	signaling
GO:0030154	P	cell differentiation
GO:0031323	P	regulation of cellular metabolic process
GO:0031325	P	positive regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0031328	P	positive regulation of cellular biosynthetic process
GO:0032502	P	developmental process
GO:0042221	P	response to chemical
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043565	F	sequence-specific DNA binding
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048518	P	positive regulation of biological process
GO:0048522	P	positive regulation of cellular process
GO:0048869	P	cellular developmental process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051173	P	positive regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0051254	P	positive regulation of RNA metabolic process
GO:0051716	P	cellular response to stimulus
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0071214	P	cellular response to abiotic stimulus
GO:0071478	P	cellular response to radiation
GO:0071482	P	cellular response to light stimulus
GO:0071489	P	cellular response to red or far red light
GO:0071490	P	cellular response to far red light
GO:0080090	P	regulation of primary metabolic process
GO:0097159	F	organic cyclic compound binding
GO:1901363	F	heterocyclic compound binding
GO:1901700	P	response to oxygen-containing compound
GO:1902680	P	positive regulation of RNA biosynthetic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:1903508	P	positive regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0104004
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network