result

Gene information

Detail information of g97780

Location

Gene	Chr	Start	End	Strand
g97780	CHR1	176810757	176811845	+

Sequences

CDS

>g97780.t1
ATGGGCAGATCCCCCTGCTGTGAAAAGGTTGGACTGAAGAAAGGGCCATGGACACCAGAAGAAGACCAGAAACTTCTTGCTTATATTCAAGAAAATGGCCATGGCAGTTGGCGTGCACTTCCCATCAATGCTGGGCTTCAAAGATGTGGAAAAAGCTGCAGACTAAGATGGACAAACTATTTAAGGCCTGATATAAAGAGAGGCAAATTCAGTCATCAAGAGGAACAAACCATCATCCAACTTCACGCACTCTTAGGCAACAGATGGTCAGCAATCGCTGGTCATCTCCCGAAAAGAACGGACAACGAAATAAAGAACTACTGGAACACACACTTGAAGAAGAGACTGACGAAAATGGGTATAGACCCGATAACCCACAAACCGAAGACGGACATGGTAAGCAGCAGTTCAGCAGAGGGAAAGCCCTCGAGTTTCAGCCACATGGCTCAGTGGGAAAGTGCAAGACTGGAAGCAGAAGCCCGCCTTGTCAGGGAATCTAAGCTTAGAAGTTCATCAAAACTTGAAACGGTAAGAACAGTGTTGTGGCAAGGAAAGAGCAGCATTGACCTGGAATCTCCTACTTCTACTTTGAACTTCTCAGCAGCAGCAGCAGCGGGTTCTGCTACTGCAGTTTCTCAAAATTTGAATCGTATGATGATGTTGAATGATAACAGAACGGTTGTTCCTGGCTTCTCAGTTGGGTTGCAAACTACTGTGTTTAGTACAGCAGAAGATTCATCAAGAAAAGAATTTGTTCATGAAGGTTTCACTGGAATGCTGTTGGAAGATGCCGATGGTTGTAAGGATTATTCATTGGAGAGAGCTGCTGCTGATTCAGATAATGCTGATGAACTTTATGGAAGTTGCATTGAGGAAGAAGATAATGGAGGAAACGAAGATGAAAGCAGCAATTACTGGAACAACATTCTAAATTTGGTCAACTCGCCCACCCATGCACATGATTCATCATCTCCAAATGAACCACCCACATATTGGAAATAA

Protein

Gene

>g97780.t1
ATGGGCAGATCCCCCTGCTGTGAAAAGGTTGGACTGAAGAAAGGGCCATGGACACCAGAAGAAGACCAGAAACTTCTTGCTTATATTCAAGAAAATGGCCATGGCAGTTGGCGTGCACTTCCCATCAATGCTGGTATGGATTAATTAACTTATCTTGGATCTTTCATTATTCTCCTAGGCTGAAGTTTTCTTAAGAATAAAATTGATTGATGCATGTCAGGGCTTCAAAGATGTGGAAAAAGCTGCAGACTAAGATGGACAAACTATTTAAGGCCTGATATAAAGAGAGGCAAATTCAGTCATCAAGAGGAACAAACCATCATCCAACTTCACGCACTCTTAGGCAACAGATGGTCAGCAATCGCTGGTCATCTCCCGAAAAGAACGGACAACGAAATAAAGAACTACTGGAACACACACTTGAAGAAGAGACTGACGAAAATGGGTATAGACCCGATAACCCACAAACCGAAGACGGACATGGTAAGCAGCAGTTCAGCAGAGGGAAAGCCCTCGAGTTTCAGCCACATGGCTCAGTGGGAAAGTGCAAGACTGGAAGCAGAAGCCCGCCTTGTCAGGGAATCTAAGCTTAGAAGTTCATCAAAACTTGAAACGGTAAGAACAGTGTTGTGGCAAGGAAAGAGCAGCATTGACCTGGAATCTCCTACTTCTACTTTGAACTTCTCAGCAGCAGCAGCAGCGGGTTCTGCTACTGCAGTTTCTCAAAATTTGAATCGTATGATGATGTTGAATGATAACAGAACGGTTGTTCCTGGCTTCTCAGTTGGGTTGCAAACTACTGTGTTTAGTACAGCAGAAGATTCATCAAGAAAAGAATTTGTTCATGAAGGTTTCACTGGAATGCTGTTGGAAGATGCCGATGGTTGTAAGGATTATTCATTGGAGAGAGCTGCTGCTGATTCAGATAATGCTGATGAACTTTATGGAAGTTGCATTGAGGAAGAAGATAATGGAGGAAACGAAGATGAAAGCAGCAATTACTGGAACAACATTCTAAATTTGGTCAACTCGCCCACCCATGCACATGATTCATCATCTCCAAATGAACCACCCACATATTGGAAATAA

Functional annotation

Database	accession number	e-value	annotation
nr	AAO49410.1	2.2e-96	MYB1
Swissprot	Q9LE63.1	5.2e-82	Transcription factor NOEK
trEMBL	Q84U53	1.6e-96	MYB1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G15310.1	51.40	2e-85	312	ATMIXTA;ATMYB16;MYB16	myb domain protein 16

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g97780	AT5G15310.1	358	115	11	1	331	1	326	51.40	2e-85	312
g97780	AT3G01140.1	351	115	7	1	315	44	379	52.71	6e-84	307
g97780	AT5G15310.2	335	140	6	1	331	1	315	51.04	2e-82	302

Ortholog group

Species	Genes
Allium cepa	g97780.t1
Allium fistulosum	AfisC1G03441
Allium sativum	Asa7G06694.1
Arabidopsis thaliana	AT5G15310.1; AT5G15310.2
Oryza sativa	LOC_Os02g36890.1; LOC_Os08g33660.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	14	61	55.8	3.5e-15
PF00249.28	Myb_DNA-binding	Domain	67	112	58.2	6.1e-16

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0000902	P	cell morphogenesis
GO:0000904	P	cell morphogenesis involved in differentiation
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0000988	F	transcription factor activity, protein binding
GO:0000989	F	transcription factor activity, transcription factor binding
GO:0001067	F	regulatory region nucleic acid binding
GO:0001076	F	transcription factor activity, RNA polymerase II transcription factor binding
GO:0001101	P	response to acid chemical
GO:0001134	F	transcription factor activity, transcription factor recruiting
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0003002	P	regionalization
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0006950	P	response to stress
GO:0006970	P	response to osmotic stress
GO:0007275	P	multicellular organism development
GO:0009653	P	anatomical structure morphogenesis
GO:0007389	P	pattern specification process
GO:0009888	P	tissue development
GO:0008150	P	biological_process
GO:0042493	P	response to drug
GO:0010038	P	response to metal ion
GO:0009628	P	response to abiotic stimulus
GO:0009651	P	response to salt stress
GO:0009719	P	response to endogenous stimulus
GO:0009723	P	response to ethylene
GO:0009725	P	response to hormone
GO:0009733	P	response to auxin
GO:0009739	P	response to gibberellin
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009889	P	regulation of biosynthetic process
GO:0009987	P	cellular process
GO:0010026	P	trichome differentiation
GO:0010033	P	response to organic substance
GO:0010035	P	response to inorganic substance
GO:0010090	P	trichome morphogenesis
GO:0010091	P	trichome branching
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0044212	F	transcription regulatory region DNA binding
GO:0014070	P	response to organic cyclic compound
GO:0016043	P	cellular component organization
GO:0046677	P	response to antibiotic
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0046686	P	response to cadmium ion
GO:0030154	P	cell differentiation
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0032989	P	cellular component morphogenesis
GO:0033993	P	response to lipid
GO:0035017	P	cuticle pattern formation
GO:0042221	P	response to chemical
GO:0042335	P	cuticle development
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043565	F	sequence-specific DNA binding
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048468	P	cell development
GO:0048856	P	anatomical structure development
GO:0048869	P	cellular developmental process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0071840	P	cellular component organization or biogenesis
GO:0080090	P	regulation of primary metabolic process
GO:0090558	P	plant epidermis development
GO:0090626	P	plant epidermis morphogenesis
GO:0097159	F	organic cyclic compound binding
GO:1901363	F	heterocyclic compound binding
GO:1901700	P	response to oxygen-containing compound
GO:1901957	P	regulation of cutin biosynthetic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network