result

Gene information

Detail information of g99300

Location

Gene	Chr	Start	End	Strand
g99300	CHR4	269953947	269958193	-

Sequences

CDS

Protein

Gene

>g99300.t1
ATGACCGATGTTCTTCTCCTTTTCATATCCATTCTTCTTACTGTGAAGCCTTCATATGGCGATCCCGTTAATATGGATCCTATGGAATGCTCTCGATCTTCACCTATTCAGACATGCAAATCCACATTGTATATTCCATCATATAATGGCCTAACCAATTATAATGTTGCGTCCGTTTACTCTGCCAATATAAGCGTCATAGATACTGTAAGTAGTCACTCTAACTTACTAGCTACAACTCTCATATATTGATAGAGATGAATAGGACGCCGACCATACAATAGATAATTCAAACTAGTGGAAAGGATTTATTCATTGAGATTCAACCATTGCACCAATTAGAATACTCATGAATCTTCTCTAAATTTTTGTTAAAAATGAGCATTCTTATTAACCATGTATTACACAGATTGTTCGACAACAAAAACGTACAGATTTTCTAGCACAAGTGTTATGTAAATGTGAAGACATTGGTGATGGCATCACTGCCTACTTCCATGATACGAACTACACAGTAAAGGTCGGTGACTCTTCGGATAGTTTGACAAACACTGAGTTCAGCGGCTTAGCGTGGAACATAACTACCACGCTTGACCCTGGTCAAAACCTAACAGTACATCTATTATGTGGGTGTGATGCAAATTCGAATTTAAATTCAAATGACAGCAAAGATATTGTGAGCTATACTGTGCAAAAGGGGGATACACTCTCTTCTATTGCTAATTTGTTTTTGGCAGATGTGGATGTAACAAAGAGTTTAAATGTGAAAATTTTAGTGGACCCGAATTTTTTGAGGCCGGGTTGGGTGTTGTTTGTGCCCATCGGAACAGCTAAAGATGATGGTAAGTATCTATTATTAGTACCAACTAGCATTTTTTTTTATTTTTTTTTCCGGCGGACCGGTAAACTCCTGAGGAGGGTATAGTAAAGTCGTCCGCTGATCCAAGCCCCCATACCCTCGGATAAATTTATATAGGATAGGGAAGCGCATGGTAGGAATCGAACCTGAGTCTTTTTACCAGAACCCATGCCTCCTTTCCACTGCGCCGCACCCGCGGACATTCATTTCATAGTTGTCAATGATGTTATTTGTGTGTTCACGTACCATATATTTCATATACAGATGCCGGTGACGATGTGTGTACGTTGTTTGTTGCATATGCATTTCATGCATGTGTACATACGTGTATATATCCTCCTATGTGTACATATGTTTAATGTATTCCATTTGCACATGTAATATATACCTGTGGACATGTTAGATGATAATCGTGTATGAGAGACATGTCCATCTCCCCTTTTAATTTTAGTCTCCCACTCTTCCCAATCTACTATGTCGTCTTACATTTTACGTTCATTTGTCAATTTGTGTAAGGTCAAGTTTATCATTGCACTCGGACATTTGGAAGGGTCCAAAGCATGGGTTTTAATCGTTAATGAAAAGATATATACATATGATAGATAGATAGAAAAATTCCTTTACAAATATATAAACATAAGATGAAACTCACTTTCAAAAGTAGCATCTCGTTAAAATTGAAATATGCTATACAATATATATATATAAATATGAAGAGCATTTTAACAGTAAAAACAGTTTGCAAATTGGAACTACAACAACGGAGTTATAACCATTCCTTGTTTAAGGCTGCAAACTGCGAGAGTTCTTGAAGTTAAAGAACTTATCGCCGGTCAAAACTTTTTTCTGCAAGGAATTCTGGTTGGAATGCAGAACAGATCATCATGCAAAATATGTTGGTGGTCAGTCTTTGCCTAAGTTCCAAACTGAGCTCAAAACAGCTCATCGCTTATTTTTCATTGGTGATCCATCTAAGTGCAATTTGGGATGTTTTGGGCTGTTTTGAATAACAAGCCTTGCAAGCAAACCTGATTTGACAATCAAGGTCTATTGGCGACTGGTGTCATTTATTTTCAATTATATTCTATTTCTGGTTGTCCGTGAATTTTTGTAATCGTGATAAGTTGTGAAGTAGGTTTTTTGGAGATTAACTGTGAGTTTTTTTTTTATCTACTACTTGTAGTGCCCTGTCTTCCACAATCAGAGGGTGTCTTGGATTCTTGCTAATTTAGAACCCAAAATCCACAACATAGCAGAACAATACCTTATTATTATATCTCGTTCTGACCTTATGCACCATAAGTTAAATATCTAAATCATTGTGATCATATAGTAACATAAGTTAAATAATTTTCTTACATCCAGATATCGAACCAGGGAACAAGAAAAAGGACAGCACTGCATTGATTCTTGGTATCACATTTTCAATAGCCTTCGTTCTGTTAGGCGTTATACTTGCAATCTACCGTAATTGGAAGCAATCACATAAAAAAACCTCAGAATTACCAAAAAAGATGGAAAGAAATACAAGTCTTATGAGCATTGCTGCACTTGAGAACCAATACCATCACAAAGATAATATGCAAGGTAAGACAGTTTCTACCTGTTAGGTTAATTTTGTGTAAGCTACATACATCAAGTTGAAGATCATCATATGTGTGTGTAGATATAGAACAAACCAATACCGAAAGACCTATCATATTCAGTCTGTCGGATGTGGAAAAGGCCACATTAAACTTCGATGAAACAAGGATGATTGGAGAAGGTGGCTTTGGTCGTGTTTATTATGGAATGCTCGGAAATCAGGTAAAAAAATAAAGATTCTGCAATATGTTGTCTTGTATATAAGTTAAAAAACTTTAACATTTTCAGACTGAATAATTCTTATGTTGCTATAGGAGGTTGCAATAAAAAGGATGAAGTCGAGTAAATCGAAGGAGTTCTTTGCAGAGCTTAAGGTGCTATGCAAAATACACCACATCAATGTGGTATGATATCTAGACATCCAAACATAAAGATAATGAATCATTGTGAAATATCCAATGTCTTATTGTGTTGAACTGAATTATCAACAGGTTGAGCTGATAGGGTATGCTAGTGGCGATGACCACTTGTACTTAGTCTACGAGTATGTTCGGTATGGTTCTCTCAATGATCATCTCCATGATCCATTGCTAAAAGGTACAGCATAAGCAAAAGCCATAGAAGTGATGTTATATTTGTTTCATATAGCTTTCCTAAATTGATGGCTTTCCTAAATTGAGGTGCCTTAAGTATACATATTGTAACAACTGTCACAGGTCATCAGCCACTTTCTTGGAATGCAAGGGCACAGATTGCACTAGATGCTGCTAGAGGGATCGAGTACATTCATGATCATACGAAAGCACATTATGTGCACCGTGACATAAAAACCAGCAATATTTTACTGGATGAGGGACTCAGAGCTAAGGTCAGTTATCTACCTACCTATCTATAATATGTTGAATTGAATACGTACACAGCTCAATGTACATGCATTTCAGACATGAAATGTTGGATTAGTCATGTTCCAGGTGGCAGATTTTGGTTTAGTGAAGCTTGTAGAGCGCAGCAGTGAAGACGATTGCATGGCAACTCGCTTAGTTGGAACTCCAGGCTATCTTCCACCAGAGTAATCCATATTTCATATTCATGTGGATCTGAATAAGTGGTGTACATTAAATATATAATGTAGAATAAAAAGTTGACAATCAATGCTACACACTTGTAGATCAGTTCGGGAACTCCAGATGACATCGAAAGGAGATGTCTTCGCATTTGGAGTGGTTCTAGCAGAGTTGATAACAGGTTGTCATGCTCTTATGAGAGACAACAAAGAAACAAGCAAGATGAAATCACTTATTTCAGTTGTAAAGTTTTTCTTGCACTGGTTTTTATTTTAATTTATTCAATACAGTGAATATGTATTATTTTCTAATTCGATTGTAAAAGTAAACAGATGCGCAAAGTATTTGAAGAAGATGATCCTGAACCGGAGTTGGAAGCTATTGTTGATGGCTACCTAGGAGACAGCTACCCAATGGAGCAAGTTTCTAAGGTCGGTTTTGTAGAATAATGAGCATGGGCTGTACACAATAAGCACTATATCCATAAGCATCCATATTTGAACCACAAAGATACATAGCATATTAAATTATTAATCATCTGTTAAATATATATTTTTTGTTAACAATATATACAGATGGCAGAGATTTCGGTCTGGTGTCTGGATGAGGAACCGGTGGATCGTCCAGAAATGAGGGAGATAACAATAGAACTCTCTCAGATAGTAATGGCTACAAAAGAATGGGAGGCATCCCTCGCAGGCAATGGTCAAGTCTTTAGTGGTGTTTTTGATGGTAGATGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020265215.1	4.5e-212	lysM domain receptor-like kinase 3
Swissprot	F4IB81.1	2.6e-95	LysM domain receptor-like kinase 3
trEMBL	A0A5P1EVG3	3.3e-212	LysM domain receptor-like kinase 3

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G51940.1	51.98	2e-98	357	LYK3	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g99300	AT1G51940.1	329	150	3	295	616	324	651	51.98	2e-98	357
g99300	AT3G21630.1	566	320	16	53	599	62	601	35.51	3e-85	313
g99300	AT2G28590.1	325	178	8	288	601	68	383	39.08	8e-56	215

Ortholog group

Species	Genes
Allium cepa	g99300.t1
Allium fistulosum	AfisC4G00440
Allium sativum	Asa4G00766.1; Asa4G03248.1
Arabidopsis thaliana
Oryza sativa	LOC_Os01g36550.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF01476.17	LysM	Domain	161	206	29.9	3.9e-07
PF00069.22	Pkinase	Domain	313	584	173.7	4.1e-51

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005515	F	protein binding
GO:0005575	C	cellular_component
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0016020	C	membrane
GO:0003824	F	catalytic activity
GO:0004672	F	protein kinase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0004675	F	transmembrane receptor protein serine/threonine kinase activity
GO:0004888	F	transmembrane signaling receptor activity
GO:0007165	P	signal transduction
GO:0007178	P	transmembrane receptor protein serine/threonine kinase signaling pathway
GO:0005488	F	binding
GO:0005623	C	cell
GO:0006464	P	cellular protein modification process
GO:0006468	P	protein phosphorylation
GO:0006793	P	phosphorus metabolic process
GO:0006796	P	phosphate-containing compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0007154	P	cell communication
GO:0007166	P	cell surface receptor signaling pathway
GO:0007167	P	enzyme linked receptor protein signaling pathway
GO:0008150	P	biological_process
GO:0009987	P	cellular process
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016740	F	transferase activity
GO:0016772	F	transferase activity, transferring phosphorus-containing groups
GO:0016773	F	phosphotransferase activity, alcohol group as acceptor
GO:0019899	F	enzyme binding
GO:0019199	F	transmembrane receptor protein kinase activity
GO:0019538	P	protein metabolic process
GO:0019900	F	kinase binding
GO:0019901	F	protein kinase binding
GO:0023052	P	signaling
GO:0036211	P	protein modification process
GO:0038023	F	signaling receptor activity
GO:0043170	P	macromolecule metabolic process
GO:0043412	P	macromolecule modification
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044464	C	cell part
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051716	P	cellular response to stimulus
GO:0060089	F	molecular transducer activity
GO:0065007	P	biological regulation
GO:0071704	P	organic substance metabolic process
GO:0071944	C	cell periphery
GO:1901564	P	organonitrogen compound metabolic process
GO:0140096

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network