result

Gene information

Detail information of g9938


Location
GeneChrStartEndStrand
g9938Scaffold_38064:HRSCAF_4180192775332011-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020276448.12.0e-234LOW QUALITY PROTEIN: squamosa promoter-binding-like protein 9
SwissprotQ6I576.11.1e-160Squamosa promoter-binding-like protein 9
trEMBLA0A5P1EDW83.9e-224SBP-type domain-containing protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT5G18830.339.431e-154 544ATSPL7;SPL7squamosa promoter binding protein-like 7

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag9938.t1
Allium fistulosumAfisC2G04726
Allium sativumAsa6G02307.1
Arabidopsis thalianaAT5G18830.1; AT5G18830.2; AT5G18830.3
Oryza sativaLOC_Os05g33810.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF03110.11SBPDomain16523991.72.2e-26

Gene Ontology
AccessionOntologyName
GO:0005515Fprotein binding
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0003674Fmolecular_function
GO:0005488Fbinding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0005654Cnucleoplasm
GO:0043231Cintracellular membrane-bounded organelle
GO:0006355Pregulation of transcription, DNA-templated
GO:0006950Presponse to stress
GO:0007154Pcell communication
GO:0046983Fprotein dimerization activity
GO:0008150Pbiological_process
GO:0042802Fidentical protein binding
GO:0009267Pcellular response to starvation
GO:0009605Presponse to external stimulus
GO:0009889Pregulation of biosynthetic process
GO:0009987Pcellular process
GO:0009991Presponse to extracellular stimulus
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0016604Cnuclear body
GO:0016607Cnuclear speck
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0033554Pcellular response to stress
GO:0031323Pregulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031667Presponse to nutrient levels
GO:0031668Pcellular response to extracellular stimulus
GO:0031669Pcellular response to nutrient levels
GO:0031974Cmembrane-enclosed lumen
GO:0031981Cnuclear lumen
GO:0035874Pcellular response to copper ion starvation
GO:0040008Pregulation of growth
GO:0042594Presponse to starvation
GO:0042803Fprotein homodimerization activity
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043233Corganelle lumen
GO:0044422Corganelle part
GO:0044424Cintracellular part
GO:0044428Cnuclear part
GO:0044446Cintracellular organelle part
GO:0044451Cnucleoplasm part
GO:0044464Ccell part
GO:0048638Pregulation of developmental growth
GO:0050789Pregulation of biological process
GO:0050793Pregulation of developmental process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0051716Pcellular response to stimulus
GO:0060255Pregulation of macromolecule metabolic process
GO:0065007Pbiological regulation
GO:0070013Cintracellular organelle lumen
GO:0071496Pcellular response to external stimulus
GO:0080090Pregulation of primary metabolic process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2001141Pregulation of RNA biosynthetic process
GO:0120126

KEGG pathway
KONameEnzyme IDPathwayPathway ID
-----

Expression pattern in different tissues

Expression pattern in BioProjects

Click here to link to expression search in BioProjects.  



Co-expression network

Click here to link to co-expression network search.