Detail information of GWHGAAEX000001/evm.TU.scaffold_0.1
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|182415146|ref|YP_001820212.1| | 1.00E-35 | galacturan 1,4-alpha-galacturonidase [Opitutus terrae PB90-1] |
| nr | gi|743760545|ref|XP_010937534.1| | 2.51E-158 | PREDICTED: polygalacturonase-like [Elaeis guineensis] |
| Swissprot | tr|P35336|PGLR_ACTDE | 5.00E-150 | Polygalacturonase (Precursor) |
| trEMBL | tr|M0RGL9|M0RGL9_MUSAM | 2.00E-154 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P08930_001} |
| TAIR | AT3G57510 | 3.00E-131 | Pectin lyase-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000014 | 3431 | 74168 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000001
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00295.16 | Glyco_hydro_28 | 57 | 386 | 4.20E-101 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH28 |
| Carbohydrate-Active enzymes Family | GH28 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01184 | E3.2.1.15 | Metabolic pathways | map01100 |
| Pentose and glucuronate interconversions | map00040 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0004650 | Molecular Function | polygalacturonase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.260 |
| SRR2545915 | Juvenile tuber | 0.180 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.000 |
| SRR5643514 | five period of Gastrodia elata | 0.040 | |
| SRR5643515 | five period of Gastrodia elata | 0.000 | |
| SRR5643524 | five period of Gastrodia elata | 0.040 | |
| SRR5643525 | five period of Gastrodia elata | 62.900 | |
| SRR5643528 | five period of Gastrodia elata | 29.800 | |
| SRR5643658 | five period of Gastrodia elata | 88.140 | |
| SRR5643659 | five period of Gastrodia elata | 0.130 | |
| SRR5643660 | five period of Gastrodia elata | 0.100 | |
| SRR5643661 | five period of Gastrodia elata | 0.100 | |
| SRR5643662 | five period of Gastrodia elata | 0.100 | |
| SRR5643663 | five period of Gastrodia elata | 0.370 | |
| SRR5643664 | five period of Gastrodia elata | 0.040 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.000 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.000 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.000 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.160 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.040 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.36 |
| Juven | Juvenile tuber | 0.00 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.46 | |
| Mother_Juven | Mother tuber of Juvenile | 0.00 |