Detail information of GWHGAAEX000003/evm.TU.scaffold_0.3
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|743846818|ref|XP_010938939.1| | 0 | PREDICTED: putative pentatricopeptide repeat-containing protein At5g06400, mitochondrial [Elaeis guineensis] |
| Swissprot | tr|Q9FNG8|PP366_ARATH | 0 | Putative pentatricopeptide repeat-containing protein At5g06400, mitochondrial (Precursor) |
| trEMBL | tr|A0A067KIM5|A0A067KIM5_JATCU | 0 | Uncharacterized protein {ECO:0000313|EMBL:KDP36081.1} |
| TAIR | AT5G06400 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000014 | 338696 | 342187 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000003
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 213 | 242 | 9.80E-06 |
| PF01535.19 | PPR | 249 | 275 | 1.2 |
| PF13041.5 | PPR_2 | 320 | 363 | 2.40E-09 |
| PF01535.19 | PPR | 387 | 416 | 4.90E-05 |
| PF01535.19 | PPR | 422 | 447 | 0.32 |
| PF13041.5 | PPR_2 | 453 | 502 | 3.80E-14 |
| PF13041.5 | PPR_2 | 703 | 747 | 1.40E-08 |
| PF01535.19 | PPR | 810 | 831 | 0.091 |
| PF01535.19 | PPR | 845 | 874 | 0.08 |
| PF01535.19 | PPR | 882 | 909 | 5.80E-05 |
| PF13041.5 | PPR_2 | 911 | 960 | 6.30E-14 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.440 |
| SRR2545915 | Juvenile tuber | 3.080 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.380 |
| SRR5643514 | five period of Gastrodia elata | 1.660 | |
| SRR5643515 | five period of Gastrodia elata | 1.320 | |
| SRR5643524 | five period of Gastrodia elata | 1.810 | |
| SRR5643525 | five period of Gastrodia elata | 0.830 | |
| SRR5643528 | five period of Gastrodia elata | 0.790 | |
| SRR5643658 | five period of Gastrodia elata | 0.900 | |
| SRR5643659 | five period of Gastrodia elata | 2.510 | |
| SRR5643660 | five period of Gastrodia elata | 3.960 | |
| SRR5643661 | five period of Gastrodia elata | 3.310 | |
| SRR5643662 | five period of Gastrodia elata | 3.710 | |
| SRR5643663 | five period of Gastrodia elata | 3.430 | |
| SRR5643664 | five period of Gastrodia elata | 3.490 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.790 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.490 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.560 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.860 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.730 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.670 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.870 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.440 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.670 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.620 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.350 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.350 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.80 |
| Juven | Juvenile tuber | 2.41 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.59 | |
| Mother_Juven | Mother tuber of Juvenile | 0.72 |