Detail information of GWHGAAEX000008/evm.TU.scaffold_0.12
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG3183 | 4.00E-98 | Predicted Zn-finger protein |
| nr | gi|672123035|ref|XP_008784866.1| | 2.30E-132 | PREDICTED: LOW QUALITY PROTEIN: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like [Phoenix dactylifera] |
| Swissprot | tr|Q0D5B9|SAP16_ORYSJ | 2.00E-123 | Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 |
| trEMBL | tr|J3MM73|J3MM73_ORYBR | 1.00E-124 | Uncharacterized protein {ECO:0000313|EnsemblPlants:OB07G25050.1} |
| TAIR | AT3G57480 | 4.00E-98 | zinc finger (C2H2 type, AN1-like) family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000014 | 833325 | 849566 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000008
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01428.15 | zf-AN1 | 13 | 51 | 2.30E-13 |
| PF01428.15 | zf-AN1 | 101 | 139 | 9.20E-08 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0008270 | Molecular Function | zinc ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 16.880 |
| SRR2545915 | Juvenile tuber | 15.200 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 14.540 |
| SRR5643514 | five period of Gastrodia elata | 17.220 | |
| SRR5643515 | five period of Gastrodia elata | 20.850 | |
| SRR5643524 | five period of Gastrodia elata | 18.040 | |
| SRR5643525 | five period of Gastrodia elata | 46.310 | |
| SRR5643528 | five period of Gastrodia elata | 49.730 | |
| SRR5643658 | five period of Gastrodia elata | 36.750 | |
| SRR5643659 | five period of Gastrodia elata | 17.690 | |
| SRR5643660 | five period of Gastrodia elata | 16.320 | |
| SRR5643661 | five period of Gastrodia elata | 17.730 | |
| SRR5643662 | five period of Gastrodia elata | 21.380 | |
| SRR5643663 | five period of Gastrodia elata | 15.020 | |
| SRR5643664 | five period of Gastrodia elata | 15.370 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 14.470 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 22.320 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 17.900 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 12.490 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 17.590 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 19.640 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 18.640 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 14.240 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 15.810 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 21.690 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 19.110 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 19.110 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 12.57 |
| Juven | Juvenile tuber | 8.11 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 47.33 | |
| Mother_Juven | Mother tuber of Juvenile | 21.42 |