Detail information of GWHGAAEX000015/evm.TU.scaffold_0.23


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|512550344|ref|YP_008088250.1|2.00E-11RNA-binding proteins (RRM domain) [Chthonomonas calidirosea T49]
KOGKOG01200Splicing factor U2AF, large subunit (RRM superfamily)
nrgi|743861092|ref|XP_010943183.1|0PREDICTED: splicing factor U2af large subunit B-like isoform X3 [Elaeis guineensis]
Swissprottr|Q9ZR40|U2A2B_NICPL0Splicing factor U2af large subunit B
trEMBLtr|M0SMW7|M0SMW7_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P11020_001}
TAIRAT4G366900U2 snRNP auxilliary factor, large subunit, splicing factor

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001421216102148099+
Transcript Sequence

Network for GWHGAAEX000015

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_13504194.50E-17
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12837U2AF2 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0006397Biological ProcessmRNA processing
GO:0003723Molecular FunctionRNA binding
GO:0003676Molecular Functionnucleic acid binding
GO:0005634Cellular Componentnucleus

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms57.340
SRR2545915Juvenile tuber55.520
SRP108465SRR5643513five period of Gastrodia elata80.230
SRR5643514five period of Gastrodia elata74.580
SRR5643515five period of Gastrodia elata79.370
SRR5643524five period of Gastrodia elata77.590
SRR5643525five period of Gastrodia elata80.580
SRR5643528five period of Gastrodia elata74.770
SRR5643658five period of Gastrodia elata80.950
SRR5643659five period of Gastrodia elata88.720
SRR5643660five period of Gastrodia elata91.220
SRR5643661five period of Gastrodia elata92.550
SRR5643662five period of Gastrodia elata85.440
SRR5643663five period of Gastrodia elata91.080
SRR5643664five period of Gastrodia elata106.650
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_183.990
SRR6049655Rhizomagastrodiae_C368-T10_good_165.870
SRR6049656Rhizomagastrodiae_C368-T07_good_184.140
SRR6049657Rhizomagastrodiae_C368-T07_good_181.240
SRR6049658Rhizomagastrodiae_C368-T04_good_185.360
SRR6049659Rhizomagastrodiae_C368-T04_good_195.890
SRR6049660Rhizomagastrodiae_C368-T01_good_190.100
SRR6049661Rhizomagastrodiae_C368-T04_good_187.340
SRR6049662Rhizomagastrodiae_C368-T01_good_187.450
SRR6049663Rhizomagastrodiae_C368-T01_good_186.600
SRR6049664Rhizomagastrodiae_C368-T10_good_187.880
SRR6049665Rhizomagastrodiae_C368-T10_good_187.880
SRP279888GastroGastrodia elata tuber 98.35
JuvenJuvenile tuber109.92
Mother_GastroMother tuber of Gastrodia elata 87.72
Mother_JuvenMother tuber of Juvenile 104.36