Detail information of GWHGAAEX000027/evm.TU.scaffold_0.60
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|383762856|ref|YP_005441838.1| | 5.00E-59 | 3-methyladenine DNA glycosylase [Caldilinea aerophila DSM 14535 = NBRC 104270] |
| nr | gi|743758789|ref|XP_010928808.1| | 1.46E-125 | PREDICTED: uncharacterized protein LOC105050470 [Elaeis guineensis] |
| trEMBL | tr|M0SU84|M0SU84_MUSAM | 5.00E-121 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P33220_001} |
| TAIR | AT5G44680 | 1.00E-96 | DNA glycosylase superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000014 | 4573915 | 4588279 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000027
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03352.12 | Adenine_glyco | 143 | 314 | 4.30E-61 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01246 | tag | Base excision repair | map03410 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006281 | Biological Process | DNA repair |
| GO:0006284 | Biological Process | base-excision repair |
| GO:0008725 | Molecular Function | DNA-3-methyladenine glycosylase activity |
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.750 |
| SRR2545915 | Juvenile tuber | 7.360 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 14.510 |
| SRR5643514 | five period of Gastrodia elata | 16.140 | |
| SRR5643515 | five period of Gastrodia elata | 13.300 | |
| SRR5643524 | five period of Gastrodia elata | 12.280 | |
| SRR5643525 | five period of Gastrodia elata | 96.100 | |
| SRR5643528 | five period of Gastrodia elata | 36.790 | |
| SRR5643658 | five period of Gastrodia elata | 63.140 | |
| SRR5643659 | five period of Gastrodia elata | 7.380 | |
| SRR5643660 | five period of Gastrodia elata | 5.850 | |
| SRR5643661 | five period of Gastrodia elata | 4.670 | |
| SRR5643662 | five period of Gastrodia elata | 3.310 | |
| SRR5643663 | five period of Gastrodia elata | 5.150 | |
| SRR5643664 | five period of Gastrodia elata | 4.130 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 12.770 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 13.250 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 19.380 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 11.210 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.170 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.690 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 10.660 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 12.100 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 10.220 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 7.120 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 19.120 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 19.120 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.29 |
| Juven | Juvenile tuber | 7.65 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 5.68 | |
| Mother_Juven | Mother tuber of Juvenile | 11.72 |