Gene detail

Detail information of GWHGAAEX000028/evm.TU.scaffold_0.62

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1356	0	Putative transcription factor 5qNCA, contains JmjC domain
nr	gi\|514815448\|ref\|XP_004982480.1\|	0	PREDICTED: uncharacterized protein LOC101776595 [Setaria italica]
Swissprot	tr\|Q9SSE9\|JMJ25_ARATH	7.00E-81	Lysine-specific demethylase JMJ25
trEMBL	tr\|I1IP58\|I1IP58_BRADI	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:BRADI4G27417.1}
TAIR	AT4G00990	0	Transcription factor jumonji (jmjC) domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000014	4666146	4671526	+

Transcript Sequence
>GWHTAAEX000028 GGGGATGGTTTATTAACAACACATCAGTTCTGCGCTTCGTCGGGCAAAGGACCGGAGTTGCAGTTCACATATTTAACTTCCGTGGTTTTTTGGCGGGCAGGATTAAGCACATTTTTAAATACATATGGAGAGAAGCCTTTGAGAGAGAGAGAGAGAGATAAATAGAAGTGCAGCACTTGGAGCTGGCGAGGGTGCTCGGCGAGGTCTAGGGTTTTGTGAGACTGAAATGGATACAAACCGTGCTTTGGCTAAGATCGATGATACTGCCTTTGAGACCGTCAAGGTATTCACTCTGCGAAAGAGAGCCTCTGCCAGGCCTACAGCAACCGTAGAAAGATCAAGTACAGAGATAGCTCAGGAGGCGAAGAAGCCTGTGCTCAAGCCATTGGCGATAAAAGGTCGGAGGAGGAAGAAGAGGAAAGTCGGTGAGAACGCAAGAGACAAGAACAAAGGATCGAAACTTGAGGCCCGATTAAAGGACATTAATAGAGATGTCGAGGAACAGAAAGAGGGGATTGCGGACGGTGTTAAGAAGCGGAAGAGACATTGTTCGAGGAATGAAAAAAACGTGATTAAGAAGATGCTGACCGGCGAAGATGCGTTGATGTGCCATCAATGCCAAAGAAATGATAAGGGAGCTATTGTGTGGTGCAAAGCCTGTAAAAGGAAGCGCTATTGTTACCCGTGTATGAAGCGATGGTATCCTAACTTAAAGCCGATAGATTTTGCTATAAAGTGCCCCTTTTGTCGGTTCAACTGCAATTGCAAATTGTGTTTGCGCATGATGGGAATTACTGCGCCCCCAAGAAGGGTCATACATGAGGAAGATAAAATACGACACTCTTTGTATACTCTGCGTCTGCTACTTCCATGGTTCAAGGACTTCCGCATGGAGCAAAATTTAGAAAAAAAATTTGAAGCAATGGTTAATGGTCTTTCGTTGAATAAAATTAAGTTACAAGAAGCTCCTTGTGAAAACGATGAGCGAGTCTACTGCAATTTCTGCAGCACATCATTAGCAGATTTCCATAGAAACTGCCCAAGCTGCTCTTATGATCTATGCTTGTCTTGTTGCCGGGATATTCGTAGAGGCTGCCTACTTAGGCAAAGTGAAAAGCAAGGTGGTGTTAATTCTGACCTTGTTAATGATCATTTGAGTGAACCGATGCAATGGAAACCCAATGCTGATGGTAGTATTCCTTGCCCGCCAAAGGAATTCGGTGGTTGCGGTAGTAGTATAATGCATCTCAAGTGTATGTTTCCAGAAGAATCGTTGTCCGAACTTGAATGGAAGGCTAACAAAATTCTTGAACACCAAAGCGCCCAACAAGATTATCCACCTCATGATCATATTCATTGCTCTTGTTTTGGAAAGAATACAATGAGAAAAACTGCTTCAAGTGAAGGTTTGAACAATTATTTATACTGCCCAACTGCAAGAAATGCCCAGAACGGAAAAGTAGAGCACTTTCGGGAACATTGGGTTAAAGGCGAACCTGTTATTGTTCGTGATGTTCTTGAGCTGACATCTGGATTGAGTTGGGAGCCAATGGTTATGTGGCGTGCGCTGCGAGAGAAGAACAGGAAAAAAGTTAATTCTGAGAATTTTGAAGTAAAAGCTATTGATTGTTTGGACTTCTGTGAGGTTGAGATCAACATTAGTCAGTTTTTCAGAGGATACTCGGATGGCAGATTGCATGCGGATGGTTGGCCTGAAATGCTAAAGCTAAAAGATTGGCCACCGTCTAGTTCTTTTGAGGAACGCTTGCCGCGCCATGGTGTTGAATTCCTCAATGCTTTACCTTTTCAAGAATATGCAAATCCTCGTGACGGCCTGCTTAATATTGCAGCAATGCTACCTAATGATGTTTTGAAGCCAGACCTTGGGCCAAAGACATACATCGCTTATGGTTTTGCGGAGGAATTGGGCAGAGGGGATTCTGTTACTAAACTTCATTGCGACATGTCTGATGCGGTAAACCTACTGACGCACACTAAAGAAATTAATCTTCCCAAAAAAGTGCTTTCTAAGATTGAGAAATTAAGAAAGAAAGTTGAGGTTGCTACAGAAGTACCTATAGTAGAAATCCCGTCTGGGCAAAGTGCTGCTGATTGTAATGATGCTCAGCTCTTGAAGTCTGAACAAAAGTGCGAGTGTGATGTTATGCTCAAATCGGAGCTCGAGACAATGGAGGCAAAAACTGCTAAGGAAGGAGTTACGAATGGAGAGCAGAATATTACCTCTAATTCTTTGAAGAATGTCAGACCTCCAGAGCATTTTGGTGATGTAAGAAAACTTGATGTTGAAAAAAATAAGAAAAAGTCCATCAAGCAACTAGCACTGAAGAAGAAAATGAGAACGGATGAAGGAATAAGGCATGAAGATGGCGCCTTGTGGGACATTTTTCGTAGAGAAGATGTTCCAAAATTAGAAGAATACCTCACAAGGCATCACAGGGAATTCAGACATTTCAGTGATACTCCTGTAGAGAAGGTTTGTCATCCTATACATGACCAAACTTTCTACCTAACTTTTGAACACAAAAGTAAGCTCAAGGAAGAGTATGGGATCGAGCCTTGGAGTTTTGTTCAAAAGCTGGGAGAGGCTGTTTTCATTCCTGCTGGATGCCCCCATCAGGTTAGAAACCTCAAGTCATGCATAAAGGTTGCGCTGGACTTTGTGTCGCCTGAAAATATTTGCGAGTGCATCAGACTGAGTGAAGAGTTTCGTTTGCTTCCACAGTTCCACAGGGCAAAGGAGGACAAGCTTGAGGTCAAGAAAATGGTGCTTCATGCTCTTTTCCAGGTCGTGAGTTATTTAGAAGGCAAATGTTTCTCACAAGAGAAAGAATGATAGACTTCTCAGGTAGTTTCGCTTTGGCGACTATTTTGGCTTTTTTGTTGGGTAAAATTGCAGTTTTGCTTTTGCTTCAGTGCATTGAGCTGCGTTTTATTTCAAGCTTTTTCTTCGCATGCCAAAACAATTTTCTTTTGTTCATTTTGGTGCTTTCATTGTGAAAGGATCTGATTACATAATGGATGAAATTTATAAGAGTTTGTTTTTTATACTCCCAAAACAATATTGAGGAATTGCATTTTTACAATCAAAGTATTCTGTACTATATTCCCAATTTTCTTTTCTTAACTTGCCGGAATAATGCATTATAAGTTATCTTTC

Network for GWHGAAEX000028

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module7

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02373.21	JmjC	722	818	3.80E-15

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Jumonji

KEGG pathway

KO	Enzyme	pathway	mapID
K15601	KDM3	Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	10.510
SRP064423	SRR2545915	Juvenile tuber	8.470
SRP108465	SRR5643513	five period of Gastrodia elata	4.410
	SRR5643514	five period of Gastrodia elata	4.550
	SRR5643515	five period of Gastrodia elata	3.400
	SRR5643524	five period of Gastrodia elata	3.960
	SRR5643525	five period of Gastrodia elata	2.810
	SRR5643528	five period of Gastrodia elata	2.200
	SRR5643658	five period of Gastrodia elata	2.080
	SRR5643659	five period of Gastrodia elata	6.550
	SRR5643660	five period of Gastrodia elata	6.180
	SRR5643661	five period of Gastrodia elata	5.640
	SRR5643662	five period of Gastrodia elata	4.830
	SRR5643663	five period of Gastrodia elata	5.480
	SRR5643664	five period of Gastrodia elata	4.560
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.720
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.090
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.490
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	6.030
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.430
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.140
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.580
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.670
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.860
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.710
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.800
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.800
SRP279888	Gastro	Gastrodia elata tuber	3.96
	Juven	Juvenile tuber	26.97
	Mother_Gastro	Mother tuber of Gastrodia elata	5.24
	Mother_Juven	Mother tuber of Juvenile	8.54