Gene detail

Detail information of GWHGAAEX000029/evm.TU.scaffold_0.64

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|262193487\|ref\|YP_003264696.1\|	9.00E-32	MATE efflux family protein [Haliangium ochraceum DSM 14365]
KOG	KOG1347	1.00E-180	Uncharacterized membrane protein, predicted efflux pump
nr	gi\|695021365\|ref\|XP_009397769.1\|	0	PREDICTED: MATE efflux family protein LAL5-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9LUH3\|LAL5_ARATH	0	MATE efflux family protein LAL5
trEMBL	tr\|M0SSP5\|M0SSP5_MUSAM	0	MATE efflux family protein {ECO:0000256\|RuleBase:RU004914}
TAIR	AT3G23550	1.00E-180	MATE efflux family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000014	4862734	4888717	+

Transcript Sequence
>GWHTAAEX000029 TAACAACTAAAGAGTGAACTCGCTGCCGTCTATTCTAACGAAATAGTGTTTAGGCTTTTGGCGAGCGCTATTATGTCTTCTTCTTCTCTCCTTGGAGGGTATGAGAAGCAGGATAACAACAGTAATACTGGTCATGGATGGTTGTCAAAGATTGTGGATGTTAAAGAAGCTAAGCTTCAGATTGGCTTTTCCATTCCCATGATTCTTACAAACGTGTGTTACTTTGGAATTACTTTGGTTTCTGTCATGTTCGCCGGCCACCTTGGCGACAAAGAACTTGCCGGTGCTACCCTCGGTAACTCCTGGGTCACAGTCACAGGCATCGCTCTCATGATCGGTTTAAGCGGGGCACTTGAGACACTCTGTGGTCAAGGATATGGTGCAGGATCATTTCACATGTTAGGAATTTACTTGCAGTCTTCTGCCATCATATCTGCAATCTTTTCAGTCTTTCTATCCATCCTGTGGTACAATACAGAGCATGTATTGATTTTCTTACAACAAGAACCTCAAATGGCACAAATGGCTGCCCTCTACGTCAAGTGCTTTATTCCTGGGATATTTGCCTATGGATTCATTCAATGCATTTTGAGGTTTTGCCAAACACAATCAGTGGTGATACCTTTGGTTGTGTTTTCAATTGTCCCACTGATCCTTCATACTGGCCTTACTTATATGTTGACTACTGTTATTGGCTTTGGATTCAAGGCAACGTCTATTTGTGCTTCTGTTTCTTTGTGGATTTCCTTTCTCATTTTAGCCATTTATATCAAGTTGTCGAGTAACTTCAAGTTTACATGGGGAGGATTTTCAATGGAGGCTTTTCAGAATATAATTCCTAGCTTGAAGTTGGCTGTCCCTTCGGCTATAATGGTTTGTTTTGAATATTGGGCCTTTGAGTTTCTGGTGCTACTTGCTGGATTGATGCCAAACTCAGAAAAAAGGACATCACTAATTGCAATGTGTGTAAACACAGAGACTATCGCATATATGATCACATATGGATTTAGCGCAGCTGTAAGCACCCGAGTTTCAAATGAGATTGGCTCTGGAAACATTAGCAATGCAAAGAATGCTGTAGCAGTGACACTTAAGCTTTCAGTATTTCTTGCGACGGTTGTAGTTCTTCTACTAAATGTTGGCCATGATCTCTGGGCAAGTTTCTTTAGCTGCAATAGTCATATTATTAAGCAGTATGGTTACATGACACCGTTGCTTACATTGTCAGTATTATTAGACTCAACACAAGGGGTTTTATCAGGAGTTGCAAGAGGGTGTGGTTGGCAGCACCTGGCCGCATGGACCAATTTTGTGGCCTTTTACTTTGTTGGCTTACCGTTATCATGTCTATTTGGTTTCAAGAAGAAATTATATGGAAAGGGGTTGTGGCTGGGGTTGATTTGTGGGCTCTTTACTCAAGCTTCAACGCTTCTTGTGATTACTTTTCGAACAAAGTGGGAAAAAATGTAGCTCTCTGCAAGGAACACACAATGCGATGCCCTTTTCGATTGAAATTTCGTTATCCAATTTTGATAAAATTCCTTTCCGAAGTGCTTGTCAATGAAGCCAAGCGAACACCATAATTCGTCTTTTCTTGAGATTGTAAATCAGTAGATGCTTTGTTTAACCTGTCTTCCATGTTTAGCTTGCAAGCACTTGCAGTCTTTCCAACGAGATAGTTGGTTGAGAAACCCATAGTTTTATGTCATACGTTCTATGCTTTTGCTGCACGTTTTCATTTAAACTTGGAGCTCTCTCTCTTGGAGGAAGAATCAAAGTAAAATTACTAAAGAAGGATCAAACCCGTTCTTAAATCAAGTATCATTCAACCCTAGTTTCTCAATTTTTTATCTATTTGGGCCGAATTCCTAACATGAAGCCAATTTCATCTATATGAATTTCTAAAATTTGGTATGAATATAAATTGTATGCAACTTAGTGATCGAGTTTAGTGCATTTGGCTCAAACATGACCAAATGTTGCTCTAGATTTTTT

Network for GWHGAAEX000029

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01554.17	MatE	42	202	1.90E-31
PF01554.17	MatE	263	424	2.50E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055085	Biological Process	transmembrane transport
GO:0015297	Molecular Function	antiporter activity
GO:0042910	Molecular Function	xenobiotic transporter activity
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	6.070
SRP064423	SRR2545915	Juvenile tuber	6.270
SRP108465	SRR5643513	five period of Gastrodia elata	7.430
	SRR5643514	five period of Gastrodia elata	7.870
	SRR5643515	five period of Gastrodia elata	7.070
	SRR5643524	five period of Gastrodia elata	6.960
	SRR5643525	five period of Gastrodia elata	5.640
	SRR5643528	five period of Gastrodia elata	1.750
	SRR5643658	five period of Gastrodia elata	3.720
	SRR5643659	five period of Gastrodia elata	5.300
	SRR5643660	five period of Gastrodia elata	4.640
	SRR5643661	five period of Gastrodia elata	4.770
	SRR5643662	five period of Gastrodia elata	4.530
	SRR5643663	five period of Gastrodia elata	5.760
	SRR5643664	five period of Gastrodia elata	5.420
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	6.410
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.410
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.350
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	7.060
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.520
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	7.080
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.850
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.750
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	3.550
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.210
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	6.000
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	6.000
SRP279888	Gastro	Gastrodia elata tuber	5.44
	Juven	Juvenile tuber	9.32
	Mother_Gastro	Mother tuber of Gastrodia elata	3.28
	Mother_Juven	Mother tuber of Juvenile	5.71