Detail information of GWHGAAEX000031/evm.TU.scaffold_0.66


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|108760346|ref|YP_630479.1|5.00E-37SNF2/helicase domain-containing protein [Myxococcus xanthus DK 1622]
KOGKOG10020Nucleotide excision repair protein RAD16
nrgi|743758958|ref|XP_010929627.1|0PREDICTED: DNA repair protein RAD16 [Elaeis guineensis]
Swissprottr|Q9FNI6|SM3L2_ARATH8.00E-87Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2
trEMBLtr|A0A061ECV1|A0A061ECV1_THECC0Helicase protein with RING/U-box domain isoform 1 {ECO:0000313|EMBL:EOY02217.1}
TAIRAT1G051200Helicase protein with RING/U-box domain

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001449593535018633+
Transcript Sequence

Network for GWHGAAEX000031

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module7

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00176.22SNF2_N1444251.20E-43
PF00176.22SNF2_N4565715.60E-06
PF00097.24zf-C3HC45926313.30E-07
PF00271.30Helicase_C6777902.00E-13
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilySNF2
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0046872Molecular Functionmetal ion binding
GO:0005524Molecular FunctionATP binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms8.280
SRR2545915Juvenile tuber9.410
SRP108465SRR5643513five period of Gastrodia elata4.250
SRR5643514five period of Gastrodia elata2.570
SRR5643515five period of Gastrodia elata2.780
SRR5643524five period of Gastrodia elata2.890
SRR5643525five period of Gastrodia elata4.900
SRR5643528five period of Gastrodia elata2.720
SRR5643658five period of Gastrodia elata4.730
SRR5643659five period of Gastrodia elata11.760
SRR5643660five period of Gastrodia elata15.180
SRR5643661five period of Gastrodia elata12.760
SRR5643662five period of Gastrodia elata16.320
SRR5643663five period of Gastrodia elata13.320
SRR5643664five period of Gastrodia elata22.090
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_13.620
SRR6049655Rhizomagastrodiae_C368-T10_good_12.600
SRR6049656Rhizomagastrodiae_C368-T07_good_13.190
SRR6049657Rhizomagastrodiae_C368-T07_good_13.170
SRR6049658Rhizomagastrodiae_C368-T04_good_11.840
SRR6049659Rhizomagastrodiae_C368-T04_good_11.490
SRR6049660Rhizomagastrodiae_C368-T01_good_12.950
SRR6049661Rhizomagastrodiae_C368-T04_good_12.820
SRR6049662Rhizomagastrodiae_C368-T01_good_15.360
SRR6049663Rhizomagastrodiae_C368-T01_good_13.440
SRR6049664Rhizomagastrodiae_C368-T10_good_13.180
SRR6049665Rhizomagastrodiae_C368-T10_good_13.180
SRP279888GastroGastrodia elata tuber 23.75
JuvenJuvenile tuber29.70
Mother_GastroMother tuber of Gastrodia elata 3.46
Mother_JuvenMother tuber of Juvenile 11.64