Gene detail

Detail information of GWHGAAEX000041/evm.TU.scaffold_0.81

Functional Annotation

Database	Orthologs	Annotation
COG	gi\|434400693\|ref\|YP_007134697.1\|	Acetoacetate--CoA ligase [Stanieria cyanosphaera PCC 7437]
KOG	KOG1175	Acyl-CoA synthetase
nr	gi\|672109229\|ref\|XP_008789122.1\|	PREDICTED: probable acyl-activating enzyme 18, peroxisomal isoform X2 [Phoenix dactylifera]
Swissprot	tr\|Q84P17\|AEE18_ARATH	Probable acyl-activating enzyme 18, peroxisomal
trEMBL	tr\|W9R5D7\|W9R5D7_9ROSA	Putative acyl-activating enzyme 18 {ECO:0000313\|EMBL:EXB71429.1}
TAIR	AT1G55320	acyl-activating enzyme 18

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000014	5518238	5581352	-

Transcript Sequence
>GWHTAAEX000041 GTTCTCTCAATGCTTGGGCTTAAACTAAGTTTATGAGCTCGAGCTTTATCGTCTCATCACAAGTTTCATTCTATCGAACAGCAGTTGCAACTCAGGGCATGGCTGCGGCGACGACAGTGAGGGAAAACGTGTGGGAAATCAAAGTGGAGGACGTGGCCGGCGCCGGACTTCCGCTTTCTGAGGCGAAGGAATTCCATTTAGCGCTCCAATCGGTGACCGACGGCTGCCGGTGCTCGGGGTCAGAGGCGGAGGTGTGGCGGGCCATTGTAGCTGCAAGATTACTGAAGCCTGAGCATCCTCACGCTGTCCACCAGCTTTTATACTACTCAGTGTACGCAAAGTGGGATTTAGCTGAGAACGGTCCACCGCCTTACTGGTTCCCCTCTCTGACACAGAGTAAACTGACAAACCTTGGACGCCTAATGGAAACCAATGGTTCTATAGTCCTGGGTTCATCATATGTGGATCCCATCAAAAGTTTTAGTCTTTTTCATAAATATTCTATTTGTCATCCAGAGGTGTACTGGTCAATTGTAGTAAAGGAGCTTTCTGTAAGATTTCTCAGCGAACCAAAATCTATTCTTGACACTTCTGATAAATTCAAGGATGGAGGAGCTTGGTTCCCTGGCGCTGTTCTGAATATAGCTGAATGTTGTCTATTGCCATCAAATACTCCAAAGAAAACAGATACGAGTTTGGCCATCGTTTGGGTGAATGAAGATTCTGATGATTCTTCTATTAGCAGTTTATCTTTAAAGGAGTTCCGGGATCAAGTGATGATGGTTGCAAATGCACTTGACACTCTTTTTACAAAGGGAGATGTAATTGCAATCGACATGCCAATGACTTCCACTGCAGTTGTCATATACTTAGCCATCATCCTAGCAGGCTACATTGTTGTGTCCATTGCTGACAGTTATGCAATCCAGGAGATTGCAATTCGCATGCAGATATCCAAGGCCAAAGGGATATTTACTCAGGATTTCATAATTAGAGGTGGCAAAAAAGTTTCTCTTTACAGCCGTGTAATAGAGGCGAGCAATTGCAAAACTATTGTGGTTCCTGCTTCTAGTAATGATGTGGAACTCAAACTAAGGAGTCATGATTTATCATGGCGAGATTTTCTTTCTCGTGTTGCTGACCTTCCCAGGCCATGCTACTATTCCCCTGTTTACCAACCGGCAGATGCAATGACTAACATTCTGTTTTCTTCTGGTACTACTGGAGAGCCCAAAGCTATCCCTTGGACACAAGTTTCACCAATTAGGTGTGCTGCTGAATCATTGGCGCAAATTGATATCCAGGCTGGAGATATATATTGTTGGCCAACTAATTTGGGATGGGTGATGGGACCAATTTTGCTATATTCGTGCTTTTTGAATGGTGCTACGTTAGCTATTTATCATGGATCACCTCTGGGTCATGGGTTTGGAAAATTTATTCAGGATGCTTCTGTGACAGTTTTAGGTACTGTACCGAGTTTAGTGAAAGCATGGAAAAGCAGTAAGTGCATGGAAGGGCTTGATTGGACAAAGATTAGGATATTTGCTTCCACTGGAGAAACTTCTGATGTTGATGATGACTTGTGGCTTTCTTCAAGATCCTTTTATAAGCCTATTATTGAATGTTGTGGTGGAACAGAGCTTGCCTCATCTTACATTCAGGGAAACTTGTTACAACCCCAAGCGTTTGGAGCATTTAGTGCACCTTCATTGTCAACTGGTATTGTAATTTTTGATGAACAAGGAATTCCTTATCCTGATGATAAACCTTGCACTGGAGAAGTTGGTTTATTTCCTAGATATATGGGAGCTAATGACAGACTACTTAATGCTGATCATAAGAAGGTTTACTTTGATGGTATGCCTTCTTTCAGAGGACAGACCCTTCGAAGACATGGAGATATACTTCAGAGAACTGTTGGGGGATACTATATTGTACTAGGAAGGGCAGATGATACTATGAACCTTGGAGGTATCAAGACAAGTGCTGTTGAGATTGAAAAGGTATGCAATAAAGCTGATGAAAGTGTGCTAGAAACGGCTGCAGTTGGCAGTCGATCCAGATCTGGTGGACCCGAGCGGCTGGCTCTCTTTGCAGTGCTAAAGCCCGGAATGATGAAGGAAGAAAACAGCTTAAAGGCAAAGTTTCAGAGAGCAATCCAAAAGGAACTAAACCCTTTGTTCAAGGTAAGCTTTGTTAAAGTTGTTCCTGAGTTTCCTCGAACTGCTTCCAACAAGCTGCTGCGACGAGTTCTAAGGGAGGAGCTGAACCGGGAGGGTTCTATCTTCAGCAAACTTTAATATGCGTTCTAGTGCATTTTTGATCCATCGTTTTCATATTGAGAATGGGAATATATTTCTGTTCCTTAATTCGATAAAACAGATTATTCATTCATCAATAAAATGGGAACATGATGCCAAATATAATTAAGATCCTGCTTTTCTTTGTGTACATTTAGATATAACTATGTGGCCTTGAAATCCAGCTGTAGAATCATTTATTTTGCTTGTTTGAAATTTTGTTCAGGTGTAACTCTTGGTTGTGAAAAAAAACTGTATATATAAAT

Network for GWHGAAEX000041

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16177.4	ACAS_N	153	208	6.10E-07
PF00501.27	AMP-binding	225	646	2.50E-35
PF13193.5	AMP-binding_C	655	736	4.20E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003824	Molecular Function	catalytic activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	24.600
SRP064423	SRR2545915	Juvenile tuber	29.210
SRP108465	SRR5643513	five period of Gastrodia elata	21.840
	SRR5643514	five period of Gastrodia elata	25.870
	SRR5643515	five period of Gastrodia elata	23.460
	SRR5643524	five period of Gastrodia elata	23.400
	SRR5643525	five period of Gastrodia elata	28.190
	SRR5643528	five period of Gastrodia elata	21.230
	SRR5643658	five period of Gastrodia elata	28.500
	SRR5643659	five period of Gastrodia elata	20.740
	SRR5643660	five period of Gastrodia elata	22.670
	SRR5643661	five period of Gastrodia elata	19.830
	SRR5643662	five period of Gastrodia elata	19.290
	SRR5643663	five period of Gastrodia elata	22.630
	SRR5643664	five period of Gastrodia elata	21.510
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	35.680
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	26.940
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	32.040
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	35.650
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	50.300
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	58.930
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	44.910
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	47.420
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	38.090
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	42.130
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	31.250
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	31.250
SRP279888	Gastro	Gastrodia elata tuber	24.04
	Juven	Juvenile tuber	27.03
	Mother_Gastro	Mother tuber of Gastrodia elata	32.19
	Mother_Juven	Mother tuber of Juvenile	31.17