Detail information of GWHGAAEX000042/evm.TU.scaffold_0.83
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|343085920|ref|YP_004775215.1| | 6.00E-13 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| KOG | KOG0619 | 0 | FOG: Leucine rich repeat |
| nr | gi|672132339|ref|XP_008789752.1| | 0 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g07560 [Phoenix dactylifera] |
| Swissprot | tr|Q9FN94|RLK7_ARATH | 3.00E-35 | Receptor-like protein kinase At5g59670 (Precursor) |
| trEMBL | tr|B8B6F2|B8B6F2_ORYSI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:EEC82104.1} |
| TAIR | AT1G28340 | 0 | receptor like protein 4 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000014 | 5662941 | 5702357 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000042
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF12819.6 | Malectin_like | 35 | 367 | 4.80E-67 |
| PF13855.5 | LRR_8 | 449 | 506 | 7.90E-10 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CBM57 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.840 |
| SRR2545915 | Juvenile tuber | 3.060 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.060 |
| SRR5643514 | five period of Gastrodia elata | 3.890 | |
| SRR5643515 | five period of Gastrodia elata | 2.650 | |
| SRR5643524 | five period of Gastrodia elata | 3.330 | |
| SRR5643525 | five period of Gastrodia elata | 3.550 | |
| SRR5643528 | five period of Gastrodia elata | 1.100 | |
| SRR5643658 | five period of Gastrodia elata | 1.900 | |
| SRR5643659 | five period of Gastrodia elata | 1.970 | |
| SRR5643660 | five period of Gastrodia elata | 1.500 | |
| SRR5643661 | five period of Gastrodia elata | 2.550 | |
| SRR5643662 | five period of Gastrodia elata | 1.670 | |
| SRR5643663 | five period of Gastrodia elata | 1.240 | |
| SRR5643664 | five period of Gastrodia elata | 1.500 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.430 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.040 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.640 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 5.840 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 9.820 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 8.100 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 5.900 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 8.440 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 6.650 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.740 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.970 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.970 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 10.77 |
| Juven | Juvenile tuber | 2.58 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 15.48 | |
| Mother_Juven | Mother tuber of Juvenile | 3.47 |