Gene detail

Detail information of GWHGAAEX000044/evm.TU.scaffold_0.85

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0828	0	Predicted E3 ubiquitin ligase
nr	gi\|743881759\|ref\|XP_010908982.1\|	0	PREDICTED: transmembrane E3 ubiquitin-protein ligase 1-like isoform X2 [Elaeis guineensis]
Swissprot	tr\|Q9C7I1\|ATL34_ARATH	1.00E-06	RING-H2 finger protein ATL34 (Precursor)
trEMBL	tr\|M0RY49\|M0RY49_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P08410_001}
TAIR	AT2G20650	0	RING/U-box superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000014	5835395	5929445	-

Transcript Sequence
>GWHTAAEX000044 AAACAATCGCTCATTTTTTCATCCAATGTAGCTTTTAAATGGCAATCATATGGATCCTAAAAATGTGCATCTTTCATCTCTTTTACTAATCACTCCATTTTCTTCGTTCTCTAATTCCCAGCGTTGTTTATGAGAATCCGCGGTTGTGGAAGGAGAAGTCTATCATAAGAAACCCATTGGAATCACTCCTGATCATAGGATTTCTTGTATCAATCTACCGTCTGGTGGCGAGGGCAATCCTAGTCCGTTGAGCTTTCACTTTCTTTATCTTCTTATTCTCGCTTTTCAATACCTGGAGCTGGTTAGCTGTTGACTCCATCCTAAGCAATCCCCAGCCTCTCCATCACGCTTGCATTTTTTTCTTTCTCTTTCTACTCTTTGTCATCTATCGGTAGTTGATTTTATCCAAGGAGTCGGAGTTGGTGGCTTGATTCCTTCTCATGTTAAATGCGCGAAGTCCTCAGTTTTATGTCTGATATTACTTGGGGAAATGGTTTTGTTTAGACGAAAGTTTGGGGTTCAGTGTGGTGTCTTTGCGGCTTTATGGTTTCTTCTTACTTGGATGCGTGAGGCCGCTGCACTGCGGCCTCTGAGAAACAGGAATCCATCTCCCTCTGCGCCATGGACTGACGAGCGGATATTTCTCAGAAGTGGTGGCAATGATCCTACTCTGTTCTCTGGATGGAATATTACAGGAACATACAGAGGAACATGGAGCTTTAGGGGTGAATCTAATCGTTCATCTAAATTTTTGAATTTTGGGGTATCCAATGGCATGTCTGTCTTTCAGCTAGCGAGTATCCCAACAAAAATAAATGGTGTACACTATGTTCAGGGAGCAGTTTTTTTTCATGATGGCCATGAGAATGATGTTGGGATTGCTCAAATGCAAGTAGAAGGTGTATATATCTGGCCTTTCAAGCAACTTCGTTTGGTAGTTAGCAGGGGATCAGATAGAGAGCTACTACATGCAGAACACTATATGTCCAATCCTTATCATTTGCTAGAAGCGTTTTCTTCACAAGTTTTTCAAGATTCTACATGGGATCAAGCACAAAGGAAAAATTCACTTACGTATGACATTGAGAAACAGTGCAACATTGAGATATCTGCTCAGATCTCCCAGGTCACATCTAGCCAAGCTGATGGTGAACATTACTGCTACCACTTGGAGGGATTAATGGAGAGTCCTGCTGTTGAGGATGATGGAGAGTGCTTTTCATCAATTCAACTTCATGCCACTTCAATCAATGTTGAAATCTATTATAGCAAAGCTGTTAATTATACCTTAATGGTCACTTTTATTTCTTTCCTCCAAGTTGTGCTGGTGATTCGACAAATGGAACATAGCAACACTCAGTCTGGTGCCGCCAAAATATCTATTTTGATGATTGGACAGCAAGCCATAATGGATGCATATCTTTGTCTTTTGCATTTGACTGCTGGAATATTAGTAGAGTCTCTGTTCAATGCTTTTGCCACAGCCGCCTTCTTTAAGTTTGTAGTATTTTCCATTTTTGAGATGAGGTACCTTCTTGCCATTTGGAAGGCAAACAGACCTTTAAGCAATGGTGAAGGTTGGGAGGCAATGAGACGTGAATTATCAGTCCTATACGGCCGTTTCTATGGAATCCTTTTGGGTGGTATTCTTGTAATGTATGAGCTTCACAGATTCTTACGCCCTGTCCTTTTCATTATGTATTCATTTTGGATACCACAAATTGTCTATAATGTCATTCGAGATACAAGAAAACCTTTGCACCCCTATTATATATTTGGCATGAGCTTGACTCGCCTTGCAATTCCATTGTACATTTTTGGCTGTCCAAGAAACTTTCTTCGAATTGAAGTTGACAGGGGCTGGTGCATATCACTTTGTATATTCATCGGATTTCAAGCCATAGTTCTTCTTCTTCAACATTATCTTGGATCTAGATGGTTTATTCCTCATCAGATATTACCTGAGAAATATTGTTACAACAGGCGGCAAGGCAGCAATGCTAGTCACACTGAGTGTGTCATCTGCATGACAGCAATTTATATGACTCTACAATCAAGTACTGACTACATGGTAACACCGTGCGATCACTTCTTCCATTCTTATTGCTTGCAAAGGTGGATGGACATAAAGATGGAATGCCCTACTTGCCGGCGCTCCCTCCCCCCTGCATAAGATGAACCCCGCCTCTGAATATGTATAAAAGGGTGTGTGTATATATATATATATA

Network for GWHGAAEX000044

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.5	zf-RING_2	508	554	1.10E-09

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008270	Molecular Function	zinc ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	9.470
SRP064423	SRR2545915	Juvenile tuber	10.490
SRP108465	SRR5643513	five period of Gastrodia elata	7.820
	SRR5643514	five period of Gastrodia elata	8.980
	SRR5643515	five period of Gastrodia elata	9.210
	SRR5643524	five period of Gastrodia elata	8.590
	SRR5643525	five period of Gastrodia elata	50.170
	SRR5643528	five period of Gastrodia elata	42.030
	SRR5643658	five period of Gastrodia elata	100.970
	SRR5643659	five period of Gastrodia elata	8.290
	SRR5643660	five period of Gastrodia elata	7.460
	SRR5643661	five period of Gastrodia elata	7.640
	SRR5643662	five period of Gastrodia elata	7.010
	SRR5643663	five period of Gastrodia elata	7.380
	SRR5643664	five period of Gastrodia elata	7.820
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	6.730
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	10.950
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.030
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	8.490
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	9.840
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	11.140
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	9.120
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	9.330
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	9.140
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	9.920
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	9.390
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	9.390
SRP279888	Gastro	Gastrodia elata tuber	8.77
	Juven	Juvenile tuber	10.17
	Mother_Gastro	Mother tuber of Gastrodia elata	11.80
	Mother_Juven	Mother tuber of Juvenile	7.82