Gene detail

Detail information of GWHGAAEX000049/evm.TU.scaffold_0.92

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|209364252\|ref\|YP_001425345.2\|	6.00E-16	5-formyltetrahydrofolate cyclo-ligase [Coxiella burnetii Dugway 5J108-111]
KOG	KOG3093	1.00E-72	5-formyltetrahydrofolate cyclo-ligase
nr	gi\|743759891\|ref\|XP_010934303.1\|	5.07E-95	PREDICTED: 5-formyltetrahydrofolate cyclo-ligase, mitochondrial [Elaeis guineensis]
Swissprot	tr\|Q8L539\|5FCL_ARATH	4.00E-73	5-formyltetrahydrofolate cyclo-ligase, mitochondrial (Precursor)
trEMBL	tr\|B9R910\|B9R910_RICCO	5.00E-87	5-formyltetrahydrofolate cyclo-ligase, putative {ECO:0000313\|EMBL:EEF52087.1}
TAIR	AT5G13050	1.00E-72	5-formyltetrahydrofolate cycloligase

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000014	6400827	6433383	-

Transcript Sequence
>GWHTAAEX000049 ATGATAGCTCAATTGATCGAAAGTAGAAGGAGATGGGTACCTGGAGGCATTGCAAATCATTGGCTCTGTCGGGTTCTTGGGTTAGGGCTTGCAGCTGATTCTTTGCCAGCAACTCCAACTGACAAACAAAGGATTCCCATGGCTCCTCAGCAGGTGGAAAAAAGAGGAATGAAGAAAATGCAAGGTGGCAAGGAGCTGGAAGTGGCTAAAAGACTAAGGGAGGACGATAGCAGGCGTACGACACCTGTGCCTCATGCAGACCACGACCGCAGGAATAGTTGGCAGCCAATAACCTTCACGAATGGCGACCCTTGCGCTGTTTTCTCCTTCCTCTTCCATTCTCTCCTGACCCTCAACTCTACATCTGTCATGTCGACCGCCTGTACCGTCGCTGCGTCGTCCGCCGCCGACCTGAAGCGTGCTCTTCGATCCAGTATCAGGAAAAAACTCCGGTCACTTTCCGCTGACCAGCGAAGGAAAGAAGACATGGATATTCAAAATCTGGTGCTGGATTCTTCATGGTTCAAGTCTGCTAGAAGGTTGTGCGCTTATATAAGCTGTCAAGCGCTGAGGGAGGTTGATACAACAAGAATTTTGTCCGAATATTTAGAGTTCAAGAGTTCTGGCATGTCTGATGTTTACTTAGATATTAATATCTTACACAACTTTTCAAGTCAAGACCATCCCAAAGAGTTAAAGAAAAAGCTTTATGTCCCTCGAGTTGAAGACATGAATAGTCATATGAGGATGCTGCACATCTCAACTACTGAAGACCTATTTGCAAATTCAATGAATATATTAGAACCATCTCCAATAGATAAAGGAATTCTTCGTGAGGATGTATTGACGGCTAGTGAGCCTGTTGATATTTTTCTTCTACCAGGTCTTGCCTTTGATAGGCAGGGGCGACGACTTGGCCGTGGTGGCGGCTATTATGATGTGCTCTTAAGGAGTTACCTGGAGCTTGTCAAGGAACGAAAGTGGAAGAAACCTCTCCTAATCGCTCTTGCGTACTCTCTCCAAATCTTGGATGAAAATGAGATTCCTATGACCGGTACTGATGTCTCTGTGGATGCTGTTGTCTCACCATCTGGTCTTGTTCCTATTAGTCCTGCAGCATTTTGTGAGATGTGATTTCACTTCATACTTAATTTTTTTGTTCTTAAACAATGTTGTAAACATTCTTGTGCGACTTTGGTTATTATTTATTTCATGTTCTTTGGAGTAGCTTTTAGATTAGTGCACTATACAGCTAGCCAATTAAACATTGTATTACACTAATTTCGATGATTGTTACTAGTTGTATGAAATTTATTTTAATGAAGTTTTTGTCAACATATTCCAGTCGTTTTTTGATGGCTCTGATTTCAGTCATCACTGAGTAAAAGTTCGAAGCTATAGTGTGCTGGAAAATGTTTGGCGTTCCATTAGAGATCAGATGACTTCTTTAATGTTGGAGTTGAGTTGAGATAATAAGGGCCATGAGGAAAATGCAGCTAAACGCTTTCAAATGTTTTGTTGTTTATTTTAACTACAAATACTGATGTACCAATTTAACAGTAAAAAATTACTTCTTGTGTAACCTTTGAGCTGTCTGCAGGAAATTTATTTTGCAGTCTAATTGAGTAATCAGTGTTCATTAGCG

Network for GWHGAAEX000049

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01812.19	5-FTHF_cyc-lig	139	204	1.00E-05
PF01812.19	5-FTHF_cyc-lig	232	363	5.10E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01934	MTHFS	Metabolic pathways	map01100
K01934	MTHFS	One carbon pool by folate	map00670

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	11.380
SRP064423	SRR2545915	Juvenile tuber	7.500
SRP108465	SRR5643513	five period of Gastrodia elata	9.450
	SRR5643514	five period of Gastrodia elata	11.870
	SRR5643515	five period of Gastrodia elata	10.510
	SRR5643524	five period of Gastrodia elata	11.310
	SRR5643525	five period of Gastrodia elata	17.990
	SRR5643528	five period of Gastrodia elata	22.890
	SRR5643658	five period of Gastrodia elata	21.310
	SRR5643659	five period of Gastrodia elata	9.420
	SRR5643660	five period of Gastrodia elata	9.510
	SRR5643661	five period of Gastrodia elata	8.930
	SRR5643662	five period of Gastrodia elata	10.030
	SRR5643663	five period of Gastrodia elata	10.100
	SRR5643664	five period of Gastrodia elata	8.260
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	7.210
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	8.260
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.040
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.650
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	5.020
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.390
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.660
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.940
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	7.360
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.830
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	9.930
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	9.930
SRP279888	Gastro	Gastrodia elata tuber	11.06
	Juven	Juvenile tuber	9.57
	Mother_Gastro	Mother tuber of Gastrodia elata	15.07
	Mother_Juven	Mother tuber of Juvenile	12.53