Gene detail

Detail information of GWHGAAEX000055/evm.TU.scaffold_0.102

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG3117	3.00E-89	Protein involved in rRNA processing
nr	gi\|743793293\|ref\|XP_010923896.1\|	4.90E-146	PREDICTED: neuroguidin isoform X1 [Elaeis guineensis]
trEMBL	tr\|A5B0C0\|A5B0C0_VITVI	6.00E-135	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN69547.1}
TAIR	AT1G07840	3.00E-89	Sas10/Utp3/C1D family

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000014	6940210	6957988	-

Transcript Sequence
>GWHTAAEX000055 CAGAAGTGCTGCCGTACACAATTTTTTTAAGAAAATCGCATTTTATCACTTATTTCGCAGGCCTCTTCGGCTTATCTTGCCTCTTGGGCTGCATCCGAGGATCTGGTTCTTCGCGTCTGGTTGGCTCTCGAAAGTCGCAGTTCAGTCAATCGCTCATCAACGCCGGGCTAGTCTCTAGTCGCTGCCTCCACCGTTGACCCGACTGCTTTTTTTCGGCCGCACTAAGGGACCACATTTAAGTGCTGTAGTGTAAAGCTGTTTCAAAGGTAGATATTCTCTGGATTAGAAGGTATTGTTTTTACAGGGTTGTGGCACTGTAAAATGGTTGAACAGGGTGAAGAAACTTTCGTCAGGGAAACTTCTCAACTGGTTGCTTTGCTTAAGGAGATGAAGGACGGATTAGATGTAGTGCAGAGCAAAGTGCAAGCCCTTACTCAGAAGGTTAAGAAGGGTCAGCTGCGAACTGCAGAAGGTATGAGTTATCTTGAGGCGAAGCATTTACTTCTTTCAAATTACTGTCAATCCATAGTCTACTATACTCTTCGTAAGGCCAAAGGCTTGTCAATTGAGGGCCATCCTCTAGTCAGGAGTCTTGTGGAGATTAGACTCTTTCTTGAAAAGATTCGGCCAATTGATAAAAAACTTGATTACCAAGTTCAAAAACTTACTAGAGCTGCTGCTAGCGGTATCGCTGCAGAACAAACACTGCAGGAGAAACAGGAGGCAGAATCTCATGAGGAAGATTTGTTGAGGTACCGCCCAAACCCGGATATGCTTGTTATCAAGACAAGCCAGGCTGAGAAGGATATTGGTGGTATATACCGACCTCCTAAATTTGCGCCCACAAGCATGGATGATGATAAAATGTCAAAACAAGAGAAACAAGTTTTAAGGAGGGATAAAGAGTTGTTGCGGCAGGCAGAGCAAAGTTCTTACATGAAAGATCTTATGAACGAGTATGAAGATAGACCTGAAGAGGTAAGAGAATTTGTTGGATCAGAAAGCCGAGAACTTTCAAGGTATATAGCAAAACGGGAAAATCAAGCTAAACAGGAAGAGGAACTCTTCACACGTGCTCCAGTTACAAAACGAGAGAAGAGAACTGAGGAGCACATGAAAAATTCAAGGAATGGGTTACTTTCCTTGACAGATGATTTTTATAATGAGATTAGAACATTGCCTCTAGATGAGAAAAAAGAGGACCACACTCCTTATATGAGCAACGGTAGTGCAGGGAAAAGATTTAAGAAGCGAAAGAGGCACTGACGAACCATCTGCAAACCCCGTCAAGATTTAAAAGGCTTAATCTGCAAATTCATTCTGATGAATCTGCCCCTGAACAAGATAACGCAGCTTGGAGGTCTCCTGTCATTTACTTTAGGTACAAGGCACGTATAATTTCAAAAGATTTAATTTTATATGGTTTTTGTAAGATTATAAAATGTTTAAAAATATGAGTTTTTTCTTAGTTTATTGGTTTATTGACAAAAATGCTAGATATACTAAGAAGTAACATGTTTATAGTCTGTTGTTGAAAATCTGTTTTGTGTAAATGATAATCTTTGTGGCCTGAAATTATGCACCTCTATTATTTTATTACTATTTGGTTGCTGCATTTTGTGCAA

Network for GWHGAAEX000055

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04000.14	Sas10_Utp3	20	100	2.90E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	71.160
SRP064423	SRR2545915	Juvenile tuber	73.200
SRP108465	SRR5643513	five period of Gastrodia elata	31.800
	SRR5643514	five period of Gastrodia elata	26.130
	SRR5643515	five period of Gastrodia elata	28.850
	SRR5643524	five period of Gastrodia elata	28.320
	SRR5643525	five period of Gastrodia elata	26.450
	SRR5643528	five period of Gastrodia elata	29.160
	SRR5643658	five period of Gastrodia elata	32.540
	SRR5643659	five period of Gastrodia elata	38.150
	SRR5643660	five period of Gastrodia elata	42.850
	SRR5643661	five period of Gastrodia elata	37.720
	SRR5643662	five period of Gastrodia elata	40.100
	SRR5643663	five period of Gastrodia elata	38.590
	SRR5643664	five period of Gastrodia elata	40.360
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	38.840
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	46.570
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	32.360
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	45.470
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	46.200
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	52.880
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	45.310
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	43.480
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	35.730
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	37.030
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	28.020
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	28.020
SRP279888	Gastro	Gastrodia elata tuber	53.99
	Juven	Juvenile tuber	56.49
	Mother_Gastro	Mother tuber of Gastrodia elata	35.16
	Mother_Juven	Mother tuber of Juvenile	43.31