Gene detail

Detail information of GWHGAAEX000059/evm.TU.scaffold_0.110

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2020	Nuclear transport receptor CRM1/MSN5 (importin beta superfamily)
nr	gi\|743820524\|ref\|XP_010931803.1\|	PREDICTED: exportin-1-like [Elaeis guineensis]
trEMBL	tr\|A5BVQ5\|A5BVQ5_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN61845.1}
TAIR	AT5G17020	exportin 1A

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000014	7171548	7219425	-

Transcript Sequence
>GWHTAAEX000059 GTTTCTGCGATGGTTGATGGACTCGGTTCACAAGTATTGCTGCGTCGTCAACTTTATGCTGCCCCACTTTCAAAATTAAGATTGCTTATGATTAGTCGTATGGCAAAACCTGAAGAAGTTCTGATTGTTGAAGATGAAAATGGAAATATTGTTCGTGAAACCATGAGAGACAATGATGTGCTTGTACAATATAAGATCATGAGAGAAACTTTGATCTATTTGACTCATCTTGATCATGAGGATACTGAACAACAGATGTTGAAAAAATTAAGTAAACAATTGAGCGGTGAAGATTGGGCATGGAACAACTTGAATACTTTGTGCTGGGCAATTGGATCCATATCCGGATCTATGATGGAAGAACAGGAAAATAGATTTCTTGTAATGGTCATCCGAGACTTGCTGAGTTTATGCGAAATTACAAAGGGAAAAGATAACAAAGCAGTTATTGCTAGTAACATCATGTATGTGGTCGGACAGTATCCAAGATTTTTAAGGGCTCATTGGAAGTTTCTTAAAACAGTTGTGAACAAATTGTTTGAATTCATGCATGAGAGTCATCCGGGAGTTCAGGATATGGCATGCGATACTTTCTTAAAAATTGTTCAGAAATGTAAGCGGAAATTTGTGATTACACAGGTTGGCGAGAATGAGCCATTTTTGTCAGAACTCTTGTCAAGCCTTGCATCTATCATTGGCGATCTTGAACCTCATCAGATTCATACATTTTATGAAGCTGTTGGGCATATGATTCAGGCGGAATCTGATCCTAGTAGAAGAGATGAATATCTGAAACGACTAATGGACCTTCCTAATCAGAGATGGGCTGAAATTATTGGCCAGGCTAGCCGGAGTGTTGATATATTAAAAGATCAAGATGTAATAAGGACAGTCCTTAATATACTTCAGACAAACACAAGTGTTGCTAGTTCTTTGGGTGCATTTTTCTTGCCACAGATAACCTTGATATTCTTGGACATGCTAACTGTTTATAGAATGTACAGTGAGCTAATATCCAACTCTATAGCAGAAGGAGGACCTTTTGCATCAAGGACATCTTTTGTGAAACTTCTTCGATCTGTCAAGCGGGAAACACTCAAGCTTATTGAAACTTTTGTTGACAAAGCTGAAGATCAACCTCAAATTGGAAAGCAGTTTATACCCCCCATGATGGATCCTGTTCTTGGCGATTATGCCAGGAATGTACCTGATGCAAGGGAATCTGAAGTCTTATCACTTTTTGCTACCATTATAAATAAGTATAAAAGCTTAATGATTGAAGATGTACCTCGCATTTTTGAAGCAGTATTTCAGTGCACACTAGAGATGATTACAAGGAATTTTGAAGATTATCCTGAGCATAGATTGAAATTCTTTTCCTTACTGCGTGCAATTGCCACCCATTGTTTCCAAGCTCTAATTCAGTTATCAACTCAGCAAGTGAAGGTTGTCATGGACTCCATCATCTGGGCATTTCGGCACACTGAAAGGAATATTGCTGAAACTGGCCTCAATCTTCTTATCGAGTTATTGAAGAATTACCAACAGGTTTCAGATTTCCGTAATCAATTTTATAGAACCTACTTCTTGACAATTGAGCAAGAAATATTTGTGGTTCTGACGGACACATTCCATAAACCTGGGTTCAAGCTACATGTCTCAGTGATCCAGCTTTTATTCAGCCTTGTTGATTCGGGCTCATTGACGGAGCCTTTGTGGGATGCCTCATCTGTTTCATATCCATTCCCCAACAACACTGCTTTTGTTCGGGATTTCACCATCAAGCTGTTAGGAACATCATTTCCAAATATGACTGCCCCGGAAGTTACTCTATTTGTTGATGGACTTTTCGAGTCAAAGCATGATATCCATGCTTTCAAGCACCATATTCGAGATTTCTTAATCCAATCAAAAGAATTCTCTGCTCAGGATAACAAGGATCTGTTTGCCGAAGAGGCTGCTGCACAGAGAGAAAGGGAACGCCAGCGGATGCTTTCGATCCCTGGACTTGTTGCACCCAGCGAGCTACAGGACGAGATGGTGGATTCATAAATCTGCACACAGCAAAAATAGGCGCCATCACCACTTTATATTATTCCTACTCTTGCTGGCACTTTCTAATGTACACCAGGCCGATATAGCGTTTTCCTCCTCTTATATTTTTTATATTTTTAATGTTTTTTTGGGGCCTTTGTTTTTTCTATCGCTTGAGCTGATCAAAGAAGCCTCTTTGTCCCAATTTCCATTACCTTTCACAGGGAATGTGTAACAGGTCCATTTGTTGAGGGGGGCTGCGTATGATATGATGCTTTGGGTTCGGACCTTAGAAGATGCTCCTATGCTACCTCTGTATTTAGGTTTTTGATTATAATTGATTGTTTTTATTTTTATTTTTCTAGTTTTTTTTCTCAAAATTTTATTTTATTTTTCTTTCATCACCTTGTCGTGTGTATTTTATAACATGAGTTTTGAGTCATCTGGTTCAAGAGCTAGAGATGAAAATATCTCCAATTTTTGTTAGCTTGCTTCCTCTCCGAGCACTTGTGATTGTCATATTATTTATTGTGTTGTTAGCTGATAGTGATGAGTGTACTTAAGATTGCATCACTGTCTTTGTCATTGTCCTGCAAGTTGATGCGTCGGGTTTTGAATTTCTTTTATTTTGAAGAAAATATCTAATAAATTTAAATTAGGTATTGTTGGACTAAAATTTGTTGATTCGCAAGCTTGGCGTTTTAGAACTGTTAAAAAGTGAAATGTAACATTTTTTGCGTTTTGGTAAAAGGTAGTTGAGTTAATTCTACTATGTAAAAAATTGTTATTATGACCGCAATTGAAACATTATAGCTGTCGAT

Network for GWHGAAEX000059

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08767.10	CRM1_C	319	641	1.40E-124

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14290	XPO1, CRM1	RNA transport	map03013
		Ribosome biogenesis in eukaryotes	map03008
		MAPK signaling pathway - fly	map04013

Gene Ontology

GO term	Ontology	Name
GO:0005049	Molecular Function	nuclear export signal receptor activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	78.350
SRP064423	SRR2545915	Juvenile tuber	62.280
SRP108465	SRR5643513	five period of Gastrodia elata	37.070
	SRR5643514	five period of Gastrodia elata	38.020
	SRR5643515	five period of Gastrodia elata	39.020
	SRR5643524	five period of Gastrodia elata	37.300
	SRR5643525	five period of Gastrodia elata	47.720
	SRR5643528	five period of Gastrodia elata	49.180
	SRR5643658	five period of Gastrodia elata	46.900
	SRR5643659	five period of Gastrodia elata	44.580
	SRR5643660	five period of Gastrodia elata	41.070
	SRR5643661	five period of Gastrodia elata	44.520
	SRR5643662	five period of Gastrodia elata	38.080
	SRR5643663	five period of Gastrodia elata	46.000
	SRR5643664	five period of Gastrodia elata	41.120
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	37.560
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	36.810
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	38.070
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	40.570
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	46.720
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	44.770
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	39.920
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	41.770
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	41.030
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	40.390
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	41.280
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	41.280
SRP279888	Gastro	Gastrodia elata tuber	51.26
	Juven	Juvenile tuber	48.02
	Mother_Gastro	Mother tuber of Gastrodia elata	45.42
	Mother_Juven	Mother tuber of Juvenile	44.39