Gene detail

Detail information of GWHGAAEX000060/evm.TU.scaffold_0.112

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|116619489\|ref\|YP_821645.1\|	8.00E-19	MATE efflux family protein [Candidatus Solibacter usitatus Ellin6076]
KOG	KOG1347	0	Uncharacterized membrane protein, predicted efflux pump
nr	gi\|695004888\|ref\|XP_009388870.1\|	0	PREDICTED: protein TRANSPARENT TESTA 12-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9LYT3\|TT12_ARATH	3.00E-152	Protein TRANSPARENT TESTA 12
trEMBL	tr\|M0S7U1\|M0S7U1_MUSAM	0	MATE efflux family protein {ECO:0000256\|RuleBase:RU004914}
TAIR	AT3G21690	0	MATE efflux family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000014	7330180	7383405	-

Transcript Sequence
>GWHTAAEX000060 CTCAATCTAAATACTCAAAGTATGGGATCTATGCTTCCTTCATTTTGACTTGATTGTTTTAATCATAGAATTTTGTTAGTTCTTAGGTGTTGAATTATCCTAATAACAATTTAGGGTTGTTACACTGGGATAAGATGCACCAAAGCTAACATAACAAGCTCCTTGCTAGTTCACTCAATCTGAATAGTTTGGGATATGGAAAGGCTATCTTCCCTTAAATTGCACCAACCTGCATAATAAGATCATTTACTCCCTTCAAATAAACAACTTATTTTGGGGAAGAGATGCCCAATCTGAAATCCTCATCTTGCTAAGAGGGATTAATTTGAGGAGTATGCTCAGGATTAACATTCCTAGATCTCCATTTCCAAGAAATTCCCCTAATAGCTCCATTGGATTTGTCATTGCATGACTGTAAGATTGTCAGCGAACAGCAGAGTCCTAATACAACTTGGTATTCAGGACAGCGCCACCTCTGAGCTCAAGGCTAATGGCAGACAGGTAGACGAGCCCAAATCAAAAGGTTGCTACTAACCTGTTCAAAGAGACGAATGAGCCATCCCAATCACTCAGTAAAAGTAAGGCTCTGAAGAAGTGATATGGGCCTCCTTTGAGTACTTTCATCAGATCAAAAAACCAGCTCCAGTTCCATTCTTCTACTTGTTATTTAAACCAGCTCCAGTTCCATTTCTGGTACTACATCACCCTCTACCCCCTCTTTGTTTCAGCCCCATCGGACAGACATGCCGGGGCCGGAGAACTGCGAGCCAGGGAGCTCAGCCGGCCAGCTTGAATCCGTCCTGAATCTGCCCGCCGTTCCGCTTTGCCGGCGCCTCTTCGTCGCCTCCGGCATCGAGACCCGCCTCCTCGTCCGGCTCGCCGCGCCCGCGGTGACCGTGTATGTCCTCAATTATGTCATGTCGATGTCGACGCAGATTTTCTCAGGCCACCTCGGAAACCTGGAGCTAGCAGCCGCATCCCTCGGCAATACCGGCATCCAGATCCTCGCGTTTGGGCTCATGCTCGGTATGGGCTCTGCCGTGGAGACGCTCTGCGGGCAGGCCTTTGGCGCCCACAAGTACAGCATGCTCGGCGTCTACATGCAGCGATCCGTCCTGCTCCTCAGCGCAGCAGCGGTCCCACTCGCCGCCGTCTACGCCTTCTCGCGTCCCATTCTGCTCCTTCTCGGCCAGTCCCAGGATATCGCAGACGCTGCCTCCCTCTTCGTCTACGGCCTCATCCCCCAAATCTTCGCCTACGCTGCCAATTTCCCGATTCAGAAGTTTCTGCAGGCGCAGAGCATCGTGGCGCCGAGCGCGGTGATAGCTTTGGCGACGGTGTTCGTGCACGTGGGGCTGAGCTGGCTAGCGGTGTATAAGCTGGGACTGGGACTGCTGGGGGCGTCGCTGGTGCTCAGCATCTCCTGGTGGATTCTGGTGGTGGCTCAGTTCATCTACATAGCAACGAACCGGAGCTGCCGGCTCACCTGGACCGGGTTCACATGGCAGGCCTTCACTGGCCTCCCCAAATTCCTGAAGATTTCCACGGCCTCCGCCGTCATGCTGTGCCTCGAGAGCTGGTATTTTCAGGTCCTCGTCCTCATTGCTGGCCTGCTTCCCGACCCGGAGCTCGCCCTCGATTCTCTCTCCGTCTGCATGACGATTTCCGGGTGGATTTTCATGGTTTCGGTTGGCTTTAACGCTGCCGCCAGCATTCGTGTGAGCAATGAACTGGGAGCGGGCAATCCCAAATCTGCGGCATTTTCAGTCTATACGGTGACAATAATGTCGTTCATCATATCGGTCATCGCTGCGATTTTAATCCTCTGTGCTCGTGACTACTTAAGCTACATATTCACTGAAGGCGAGACAGTGGCAAATGCTGTTTCCGATCTCTGCCCTCTGCTCGCTATCACCATCATCCTCAATGGCATTCAGCCCGTCTTATCTGGAGTGGCTGTTGGATGTGGATGGCAAAGTTTTGTTGCCTACGTTAACGTTGGCTGTTACTATTTTGTTGGTTTACCTGCTGGCATATTCCTCGGATTTGACTTCGGCCTTGCCCTTGGAGCAAAGGGAATATGGTGGGGTATGATTGGGGGAACATTCATGCAAACGCTTATTCTTGTTTGTGTCACTATCAGAACAAACTGGAGCAAAGAGGTTGAAAAGGCCCACCAAAGATTGGACACTTGGGATGATACGAAGAAGCCACTACTTGCAAACAAAAGTTGACGAGGCTTTTGCCAAAAGAAGAATGAGTGCTCTATTATACGTAGTTCTATTATGCACACTCAAAAAATGTTTAGATGTTGGTACATATCAAGCCAAGTTGTTTCCTATTTGCATCAATGCTCTTTTTTCTTATAACAAAATCATGGAAGATGTGAATAGTGACTAAGTGGTTAGGATTTTTTGATTTAAACTCTTTGCAGGTCAAATGTTTTAATCTCATCGACCACATAATTGCCTCTTGAAG

Network for GWHGAAEX000060

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01554.17	MatE	48	208	5.60E-32
PF01554.17	MatE	270	429	6.70E-32

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055085	Biological Process	transmembrane transport
GO:0042910	Molecular Function	xenobiotic transporter activity
GO:0015297	Molecular Function	antiporter activity
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	7.620
SRP064423	SRR2545915	Juvenile tuber	12.690
SRP108465	SRR5643513	five period of Gastrodia elata	7.570
	SRR5643514	five period of Gastrodia elata	9.440
	SRR5643515	five period of Gastrodia elata	10.220
	SRR5643524	five period of Gastrodia elata	7.380
	SRR5643525	five period of Gastrodia elata	21.320
	SRR5643528	five period of Gastrodia elata	17.150
	SRR5643658	five period of Gastrodia elata	22.470
	SRR5643659	five period of Gastrodia elata	26.020
	SRR5643660	five period of Gastrodia elata	28.720
	SRR5643661	five period of Gastrodia elata	28.970
	SRR5643662	five period of Gastrodia elata	38.840
	SRR5643663	five period of Gastrodia elata	36.900
	SRR5643664	five period of Gastrodia elata	40.260
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	25.070
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	11.270
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	16.100
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	25.510
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	29.030
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	42.990
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	23.510
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	26.320
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	8.470
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	15.150
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	10.590
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	10.590
SRP279888	Gastro	Gastrodia elata tuber	23.61
	Juven	Juvenile tuber	26.74
	Mother_Gastro	Mother tuber of Gastrodia elata	8.25
	Mother_Juven	Mother tuber of Juvenile	11.98