Detail information of GWHGAAEX000063/evm.TU.scaffold_0.115


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|695079744|ref|XP_009387298.1|2.04E-20PREDICTED: uncharacterized protein LOC103974248 [Musa acuminata subsp. malaccensis]
Swissprottr|P35721|C560_MARPO2.00E-07Succinate dehydrogenase cytochrome b560 subunit
trEMBLtr|I1GTW8|I1GTW8_BRADI2.00E-20Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI1G26050.1}

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001474620047484804-
Transcript Sequence

Network for GWHGAAEX000063

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01127.21Sdh_cyt1551945.70E-06
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00236SDHC, SDH3 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Biosynthesis of antibioticsmap01130
Carbon metabolismmap01200
Citrate cycle (TCA cycle)map00020
Oxidative phosphorylationmap00190
Thermogenesismap04714

Gene Ontology

GO term OntologyName
GO:0016627Molecular Functionoxidoreductase activity, acting on the CH-CH group of donors
GO:0016020Cellular Componentmembrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms185.960
SRR2545915Juvenile tuber184.990
SRP108465SRR5643513five period of Gastrodia elata188.580
SRR5643514five period of Gastrodia elata185.350
SRR5643515five period of Gastrodia elata173.070
SRR5643524five period of Gastrodia elata179.690
SRR5643525five period of Gastrodia elata212.170
SRR5643528five period of Gastrodia elata200.360
SRR5643658five period of Gastrodia elata200.610
SRR5643659five period of Gastrodia elata219.090
SRR5643660five period of Gastrodia elata213.620
SRR5643661five period of Gastrodia elata223.320
SRR5643662five period of Gastrodia elata242.520
SRR5643663five period of Gastrodia elata218.760
SRR5643664five period of Gastrodia elata279.120
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1186.100
SRR6049655Rhizomagastrodiae_C368-T10_good_1578.850
SRR6049656Rhizomagastrodiae_C368-T07_good_1173.990
SRR6049657Rhizomagastrodiae_C368-T07_good_1197.710
SRR6049658Rhizomagastrodiae_C368-T04_good_1144.860
SRR6049659Rhizomagastrodiae_C368-T04_good_1162.020
SRR6049660Rhizomagastrodiae_C368-T01_good_1171.370
SRR6049661Rhizomagastrodiae_C368-T04_good_1146.550
SRR6049662Rhizomagastrodiae_C368-T01_good_1171.660
SRR6049663Rhizomagastrodiae_C368-T01_good_1158.090
SRR6049664Rhizomagastrodiae_C368-T10_good_1211.400
SRR6049665Rhizomagastrodiae_C368-T10_good_1211.400
SRP279888GastroGastrodia elata tuber 159.45
JuvenJuvenile tuber114.78
Mother_GastroMother tuber of Gastrodia elata 93.23
Mother_JuvenMother tuber of Juvenile 97.01