Detail information of GWHGAAEX000069/evm.TU.scaffold_0.123


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|220916830|ref|YP_002492134.1|2.00E-104isocitrate lyase [Anaeromyxobacter dehalogenans 2CP-1]
KOGKOG12600Isocitrate lyase
nrgi|11131348|sp|Q9SE26.1|ACEA_DENCR0RecName: Full=Isocitrate lyase; Short=ICL; Short=Isocitrase; Short=Isocitratase [Dendrobium crumenatum]
Swissprottr|Q9SE26|ACEA_DENCR0Isocitrate lyase
trEMBLtr|V4TK04|V4TK04_9ROSI0Isocitrate lyase {ECO:0000256|PIRNR:PIRNR001362}
TAIRAT3G217200isocitrate lyase

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001476729347675297-
Transcript Sequence

Network for GWHGAAEX000069

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00463.20ICL235512.20E-256
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01637E4.1.3.1, aceA Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Glyoxylate and dicarboxylate metabolismmap00630

Gene Ontology

GO term OntologyName
GO:0019752Biological Processcarboxylic acid metabolic process
GO:0003824Molecular Functioncatalytic activity
GO:0004451Molecular Functionisocitrate lyase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms0.510
SRR2545915Juvenile tuber1.350
SRP108465SRR5643513five period of Gastrodia elata2.320
SRR5643514five period of Gastrodia elata1.030
SRR5643515five period of Gastrodia elata1.150
SRR5643524five period of Gastrodia elata3.360
SRR5643525five period of Gastrodia elata0.650
SRR5643528five period of Gastrodia elata3.770
SRR5643658five period of Gastrodia elata7.560
SRR5643659five period of Gastrodia elata5.580
SRR5643660five period of Gastrodia elata5.900
SRR5643661five period of Gastrodia elata4.620
SRR5643662five period of Gastrodia elata5.720
SRR5643663five period of Gastrodia elata3.160
SRR5643664five period of Gastrodia elata6.440
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_11.680
SRR6049655Rhizomagastrodiae_C368-T10_good_11.130
SRR6049656Rhizomagastrodiae_C368-T07_good_12.230
SRR6049657Rhizomagastrodiae_C368-T07_good_11.060
SRR6049658Rhizomagastrodiae_C368-T04_good_10.250
SRR6049659Rhizomagastrodiae_C368-T04_good_10.110
SRR6049660Rhizomagastrodiae_C368-T01_good_11.110
SRR6049661Rhizomagastrodiae_C368-T04_good_10.100
SRR6049662Rhizomagastrodiae_C368-T01_good_10.700
SRR6049663Rhizomagastrodiae_C368-T01_good_10.540
SRR6049664Rhizomagastrodiae_C368-T10_good_12.200
SRR6049665Rhizomagastrodiae_C368-T10_good_12.200
SRP279888GastroGastrodia elata tuber 2.62
JuvenJuvenile tuber4.16
Mother_GastroMother tuber of Gastrodia elata 21.08
Mother_JuvenMother tuber of Juvenile 16.36