Gene detail

Detail information of GWHGAAEX000071/evm.TU.scaffold_0.132

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|71907234\|ref\|YP_284821.1\|	3.00E-22	protein kinase:GAF [Dechloromonas aromatica RCB]
nr	gi\|731351331\|ref\|XP_010686980.1\|	0	PREDICTED: cysteine-rich receptor-like protein kinase 10 [Beta vulgaris subsp. vulgaris]
Swissprot	tr\|Q9M0X5\|CRK25_ARATH	8.00E-147	Cysteine-rich receptor-like protein kinase 25 (Precursor)
trEMBL	tr\|A0A061GG78\|A0A061GG78_THECC	4.00E-171	Cysteine-rich RLK 29 {ECO:0000313\|EMBL:EOY28561.1}
trEMBL	tr\|A0A061GG78\|A0A061GG78_THECC	1.00E-129	Cysteine-rich RLK 29 {ECO:0000313\|EMBL:EOY28561.1}
trEMBL	tr\|A0A061GG78\|A0A061GG78_THECC	1.00E-60	Cysteine-rich RLK 29 {ECO:0000313\|EMBL:EOY28561.1}
trEMBL	tr\|A0A061GG78\|A0A061GG78_THECC	1.00E-58	Cysteine-rich RLK 29 {ECO:0000313\|EMBL:EOY28561.1}
trEMBL	tr\|A0A061GG78\|A0A061GG78_THECC	1.00E-33	Cysteine-rich RLK 29 {ECO:0000313\|EMBL:EOY28561.1}
trEMBL	tr\|A0A061GG78\|A0A061GG78_THECC	2.00E-23	Cysteine-rich RLK 29 {ECO:0000313\|EMBL:EOY28561.1}
trEMBL	tr\|A0A061GG78\|A0A061GG78_THECC	6.00E-17	Cysteine-rich RLK 29 {ECO:0000313\|EMBL:EOY28561.1}
TAIR	AT4G05200	3.00E-146	cysteine-rich RLK (RECEPTOR-like protein kinase) 25

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000014	7985594	8062387	+

Transcript Sequence
>GWHTAAEX000071 ATGGTTGACCTTAGGGATACCAAGTTCTCCATGGTTGAGTTTAGCACCTACAGTTCGAATCTGAACCTCACACGGTCCACCCTTTCCTCCTCCAACACCTCCATCAGCGGCTTCGAGACCAAAATCGAAGGCAACATTCCCAACAGAGTTTACAGCCTCGTTCTCTGCCGCGGGGACACCGACGCCTTCGAATGCCTCTCCTGCATCTCCACCGCAGCTTCCATCATCCAAAAGAACTGCACGAACTACAAAGACGCCGTCATATGGTACGACAACTGCCAACTCCGCTATTCTAACAAGGACTTCCTCACCGCCCCTGACATCACCTACTTCAAGCAATTGATAAATTCCCAGCTAATCTCGGACGACCAACTCCAGCAGTTAGAAACTCAAACCACTGCGCTGCTGACAAAGATGACCGACCTCGCGGTGCGTGACTCATCGCATTATTTCGCCACCGGAGAAACAGCGCTCAATGGGACAGATGTAGTGTTCGCGCTTGTGCAGTGCGCGCGCGATTTGCCCTCGGGCGATTGTCAGTGGTGTCTGCAGAAAGCGATGGCGGAGATCACAGATTCGCTGATAAGATGGAGGGGAGGAAGAGTGTTGGGGATGTGGTGTAATATGAGCACCTACAGTTCGAATCTGAACCTCACACGGTCCACCCTTTCCTCCTCCAACACCTCCATCAGCGGCTTCGAGACCAAAATCGAAGGCAACATTCCCAACAGAGTTTACAGCCTCGTTCTCTGCCGCGGGGACACCGACGCCTTCGAATGCCTCTCCTGCATCTCCACCGCAGCTTCCATCATCCAAAAGAACTGCACGAACTACAAAGACGCCGTCATATGGTACGACAACTGCCAACTCCGCTATTCTAACAAGGACTTCCTCACCGCCCCTGACATCACCTACTTCAAGCAATTGATAAATTCCCAGCTAATCTCGGACGACCAACTCCAGCAGTTAGAAACTCAAACCACTGCGCTGCTGACAAAGATGACCGACCTCGCGGTGCGTGACTCATCGCATTATTTCGCCACCGGAGAAACAGCGCTCAATGGGACAGATGTAGTGTTCGCGCTTGTGCAGTGCGCGCGCGATTTGCCCTCGGGCGATTGTCAGTGGTGTCTGCAGAAAGCGATGGCGGAGATCACAGATTCGCTGATAAGATGGAGGGGAGGAAGAGTGTTGGGGATGTGGTGTAATATGAGGTACGAGCTCTATAAGTTCTATAACGGTACCTCCTTAGTGCAACAATCTGCCTCTTCTCTGCCTCCGACGAGCGGGCCATCCAACACCCGATTTTCGGCAGATTCATCTCGTGGAGTTTTTCTGGCAACGGTCATTCCTATTGTGGGTGGATCTATTCTCTTTGCTACCCATGGCGTGTGGTGGCGAAGAAGAGCGTCCAGTATAAGGATGCGTCAAATTGATAAACCTAAAGAGATTACAGATGTTAATACCATGCGGTTTGATTTATCTACACTTAAAAAAGCAACATCAAATTTCTCAGAACTCATGAAACTTGGTGAAGGTGGTTTTGGACCTGTTTACAAGGGAGTATTACCTAATGGTACAGAAATTGCAGTCAAGAGGCTCTCAATCGGATCTAACCAAGGGACTCAAGAGCGAAAAAATGAAATGGCTCTAATAGCTAAACTGCAACACAGAAATCTTGTGAGAATACTTGGTTCATGCCTGGAAAATCAAGAAAAGCTGCTCATTTATGAATACGTTCCTAACAAAAGCTTAGACACCATTCTCTTTGATTCAGCAAGAAGTAAACTACTGAATTGGGACAAAAGATACAAGATAATTGAAGGGATTGCTCGTGGCCTGCTTTACCTCCATGAAGACTCCCGACTAAAGATCATTCATAGGGATCTTAAAGCTGGCAATGTGTTGTTAGACGCAAACATGAACCCAAAAATTTCTGATTTTGGCACGGCCAGGCTTTTCAGTGACGATGAATCCAAAGGGATAACAAGCCATGTTATCGGAACACTTCGGTACATGGCTCCTGAATATCATTTGCATGGCCATTTCTCAGTCAAGTCTGATGTATTTAGCTTTGGTGTGCTGCTTTTAGAGATTGTAACAGGAAAGCGCGGCAGTTGTCCTTTCTCTCTTTCAGCCTATGTACGGGAGCATTGGAAAAAGGGAACGATCATAGAGATTGTGGATCCAGCTATTGGAGAACTTGTTCCAAGAAGTGAAGTCACGATATGCATTAAAATAGGACTACGATGTGTACAACATGATCCGCTTCAAAGACCTTCTATGAATGCAGTGTTGGTCGAGCTCAACAGCCGTGCAGATCTCGATAGCCCATCAACATCAGAAAGTACCTTACGCACAGGTACTTTTATACGGTTATCTGATGCGCTTCTTGCTGATAAATATCATAGATCTATGAGCTCGTTCAGGCCGGTGTCTCCTATTGAATTGACCATTTCAGAAAATGTTAATAAAGCCAGCAATTGCCCTCGACTCCCCTTGGCGAAAGACACACTGTGGCATAACTGCAACGAAAACGCTGGAAACTTCACCATCGACAGCACCTACAGTTCGAATCTGAACATCACACTGTTCACCCTTTCCTCCTCCAACACCTCCATCAGCGGCTTCGCGACCAAAATCGAAGGCAGCATTCCCAACCGCGTTAACGGTCTCGTTTTCTGCAGGGGAGACATCAACGCCACAACATGCCTCTCTTGCATCTCGACCGCAGCCTCCGACATCCAACAGATCTGCCCGTACTACAAAGACGCCGCCATATACTACGACTACTGTCAACTCCGCTTCTCCAACCTCGACTTCCTCACAGCCCCTGACATCTCCACCAACATCAAACTCTGGATGAGAAACCCCCAGAGCATCTCTGCCGAGCAACTCCCGCGGTACGAAGATCAAATTACTGCTCTGATGGCCAGCATGATCGATTTCGCGGTGGGTAACGCGGCGCAAAATTTCGCAACCGGACAAACGGCGCTCGATGGGAAAGATGTAGTATTCGGGCTTGTGCAGTGCGCGCGGGATTTGTCCTCTACGAATTGCCGGTCGTGCCTGCAGGAAGCGGTTAATCTGATCACAGAGAAAGGTAGTTATTTAAAAGGACAGAGGGGAGGAAGAGTGGCGGGGATATGGTGTAATATGAGGTACGAGTTCTATCAGTTCTATAAAGGTACTTCCTTAGTGCAGCAGCAGCAGCTTACCTCTTCTCAGCCTCCGGCGAGCCAGCCATCATCACCCAATAATATTACCCGATCTCCGGCAGATTCATCTCGTGGAGGAAAAAGCACGGTCACCATTGTTCTGGCAATCACCATTCCTGCGGTGGCTGGATCTGTTCTCATTGCTACTCTTTGCATATGGTTTTGGAGAAGAGGGCCAGAACCAAAGCCTCGTCATTCAAGTAGAAGTAAACTACTTGACTGGGACAAAAGATTCAAGATAATTGGAGGAATTGCTCGTGGCCTGCTTTACCTTCATGAAGACTCCCAACTAAAGATAATTCACAGGGATCTTAAAGCTAGCAATGTATTGTTAGATGCAGACATGAACCCAAAAATTTCAGATTTTGGCACAGCCAGGCTTTTCAATGACAATGAGACCAAAGGGATAACAAGCCATGTTATCGGAACACCTGGGTACATGGCTCCAGAATATCAATTGCACGGCCAGTTCTCAGTCAAGTCTGATGTATATAGTTTTGGTGTGCTGCTTTTAGAGATTGTAACAGGAAGGAGTAGCAGTCGTTCCTTCAATGTTTCACGCTATGTATGGGAGCATTGGAACAAGGGAACGATCATAGAGATTGTAGATCCAGCTGCTGGAAAAGTTGTTCCAACAAGTGAAGTCACGAGATGCATTCAACTAGGACTGCTGTGTGTGCAACCTGATCCGCTTCAAAGGCCTTCTATGACTGCAGTGCTGGTTGAGCTCAACAGCCATACACATACTGGAACCCTCGATATGTCTGAAAGTGGCTTCAGCACAACTACTTTTTCGAGCTCATCTGAGGCGCTGCTTCTGGATGAATATCACAGATCTATGAGCTCGTTCAGGCCGGTGTCTCCTAATGAATTGACCATTTCAGAAGTAGATCCTAGATAA

Network for GWHGAAEX000071

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01657.16	Stress-antifung	14	99	1.90E-17
PF01657.16	Stress-antifung	129	208	1.80E-06
PF01657.16	Stress-antifung	209	294	3.30E-17
PF01657.16	Stress-antifung	324	408	5.20E-09
PF07714.16	Pkinase_Tyr	508	768	2.50E-46
PF01657.16	Stress-antifung	843	938	1.60E-17
PF01657.16	Stress-antifung	967	1057	7.80E-12
PF00069.24	Pkinase	1143	1313	6.90E-29

Protein Sequence

>GWHPAAEX000071
MVDLRDTKFSMVEFSTYSSNLNLTRSTLSSSNTSISGFETKIEGNIPNRVYSLVLCRGDTDAFECLSCISTAASIIQKNCTNYKDAVIWYDNCQLRYSNKDFLTAPDITYFKQLINSQLISDDQLQQLETQTTALLTKMTDLAVRDSSHYFATGETALNGTDVVFALVQCARDLPSGDCQWCLQKAMAEITDSLIRWRGGRVLGMWCNMSTYSSNLNLTRSTLSSSNTSISGFETKIEGNIPNRVYSLVLCRGDTDAFECLSCISTAASIIQKNCTNYKDAVIWYDNCQLRYSNKDFLTAPDITYFKQLINSQLISDDQLQQLETQTTALLTKMTDLAVRDSSHYFATGETALNGTDVVFALVQCARDLPSGDCQWCLQKAMAEITDSLIRWRGGRVLGMWCNMRYELYKFYNGTSLVQQSASSLPPTSGPSNTRFSADSSRGVFLATVIPIVGGSILFATHGVWWRRRASSIRMRQIDKPKEITDVNTMRFDLSTLKKATSNFSELMKLGEGGFGPVYKGVLPNGTEIAVKRLSIGSNQGTQERKNEMALIAKLQHRNLVRILGSCLENQEKLLIYEYVPNKSLDTILFDSARSKLLNWDKRYKIIEGIARGLLYLHEDSRLKIIHRDLKAGNVLLDANMNPKISDFGTARLFSDDESKGITSHVIGTLRYMAPEYHLHGHFSVKSDVFSFGVLLLEIVTGKRGSCPFSLSAYVREHWKKGTIIEIVDPAIGELVPRSEVTICIKIGLRCVQHDPLQRPSMNAVLVELNSRADLDSPSTSESTLRTGTFIRLSDALLADKYHRSMSSFRPVSPIELTISENVNKASNCPRLPLAKDTLWHNCNENAGNFTIDSTYSSNLNITLFTLSSSNTSISGFATKIEGSIPNRVNGLVFCRGDINATTCLSCISTAASDIQQICPYYKDAAIYYDYCQLRFSNLDFLTAPDISTNIKLWMRNPQSISAEQLPRYEDQITALMASMIDFAVGNAAQNFATGQTALDGKDVVFGLVQCARDLSSTNCRSCLQEAVNLITEKGSYLKGQRGGRVAGIWCNMRYEFYQFYKGTSLVQQQQLTSSQPPASQPSSPNNITRSPADSSRGGKSTVTIVLAITIPAVAGSVLIATLCIWFWRRGPEPKPRHSSRSKLLDWDKRFKIIGGIARGLLYLHEDSQLKIIHRDLKASNVLLDADMNPKISDFGTARLFNDNETKGITSHVIGTPGYMAPEYQLHGQFSVKSDVYSFGVLLLEIVTGRSSSRSFNVSRYVWEHWNKGTIIEIVDPAAGKVVPTSEVTRCIQLGLLCVQPDPLQRPSMTAVLVELNSHTHTGTLDMSESGFSTTTFSSSSEALLLDEYHRSMSSFRPVSPNELTISEVDPR

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_DLSV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0005524	Molecular Function	ATP binding
GO:0004672	Molecular Function	protein kinase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	15.130
SRP064423	SRR2545915	Juvenile tuber	13.610
SRP108465	SRR5643513	five period of Gastrodia elata	8.590
	SRR5643514	five period of Gastrodia elata	7.670
	SRR5643515	five period of Gastrodia elata	9.390
	SRR5643524	five period of Gastrodia elata	10.440
	SRR5643525	five period of Gastrodia elata	21.670
	SRR5643528	five period of Gastrodia elata	22.330
	SRR5643658	five period of Gastrodia elata	15.340
	SRR5643659	five period of Gastrodia elata	10.380
	SRR5643660	five period of Gastrodia elata	9.520
	SRR5643661	five period of Gastrodia elata	11.100
	SRR5643662	five period of Gastrodia elata	7.760
	SRR5643663	five period of Gastrodia elata	9.240
	SRR5643664	five period of Gastrodia elata	9.300
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.840
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.560
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.370
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.820
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.060
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.910
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.270
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.930
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	7.780
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	7.130
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.010
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.010
SRP279888	Gastro	Gastrodia elata tuber	10.46
	Juven	Juvenile tuber	8.75
	Mother_Gastro	Mother tuber of Gastrodia elata	14.41
	Mother_Juven	Mother tuber of Juvenile	17.79