Gene detail

Detail information of GWHGAAEX000076/evm.TU.scaffold_0.138

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743793708\|ref\|XP_010923996.1\|	0	PREDICTED: chitin-inducible gibberellin-responsive protein 1-like [Elaeis guineensis]
Swissprot	tr\|Q69VG1\|CIGR1_ORYSJ	0	Chitin-inducible gibberellin-responsive protein 1
trEMBL	tr\|M0T9S7\|M0T9S7_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P24310_001}
TAIR	AT5G48150	2.00E-177	GRAS family transcription factor

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000014	8254519	8282914	+

Transcript Sequence
>GWHTAAEX000076 AGCCTATTAGGAAGAAGGTATGCAGAAGCTCATTACCCGTAACTCGCCCTGAATGAAACGGCCACATCCTATTTAACCGGAAAGAGCCGCTCAAACTCTCGCCGCTCAATTGTGTGCTGTTCGACTTTCTTCCGTCACCGAGCCCTTTCGCTCGGCTCTCTCGCACGAAGGAAAGTTCTGCGACAAAAGCTTAGGAGCCGACGGGAGTAAATCCGACGTCTCAGCAAGCGACGTCCACTCTGCCAACTGGGAAGGGTAGAGTCGGCGACATCCGCTCAGCACGATTTCTTCTGCGCACGATCTCTTCCGCGCTCGATCTTTTATGCAGGCACGATCTTCTTGCAAGTCGACACATCAAGGTTGTGAGTGAATCGTCCTATTAAGTCAAAACCCAAAAGAGCAACAGGGTGTTTTGTATTAGTTCTGCGCGTGGTTCTCAAAAGATGACATCTTATTCAAAAGAGTTCTATTCATGCATGGAAACAACAAGAATAATACCAGAAGAACATCCGATGCAATCGCATCAGCATGGACCCTCATCACGGGCTCTTTAGATACTACGGAATTCAGCTGACCGGCGCCAATCATCTTCCATATGAATTTTGTTCTTCTGAATTCAAGTTTGATCTTGGCTGCTCACCCAACTCTCCCTTTTCCGCCTTCTTTGATTGCGACTCGTGTGTTCCAAGCAACAGTCAGAATCATGCTGGTTGCAGCCGTAGCATGAAGCTCGCCCTCCAAAAAATTGAGAGAGTCCTCATGGCGCCAGATAACATTGAAACAGCCACCAGTACAGACACTTCTCCCCAGGAAGACAAATCATATGGCTACAGTCATCATCATCCTGAGAAGCGGCAAAGGGAGGCTCCCCATGGGGTGGAGGATATCAAACATTTGCTGGTGAGGTGCTCTGAAGCCCTGGGCGACGATGGCAACAAGGTCGGAAAGTTTGCAGAGCTCTTAAAAGAAGCAAGTAAGTTTGTATCCATCAATGGTGATCCGATCCAACGAGTTGGCGCGTATGTGCTGGAAGGACTGGTGGCCCGGAACGAAGCCTCGGGCACCAACATCTACCGGTCCCTGAGGTGCCGCCGACCGGATAGCAAGGAGCTTCTGTCGTACATGCGCATTCTGTACGACATCTGCCCTTATTTCAAATTCGGTTATATGGCCGCCAACGGCGCAATCGCGGAGGCGCTGAGAAGCGAGGACAGGATTCACATAATCGACTTCCAGATCGGGCAGGGGACGCAGTGGGTGACATTGATACAGGCGCTGGCCGCTCGTCCGAGCGGCCCTCCCCACGTTCGGATCACCGGAATCGACGACCCGGTGTCGGAGTACGCTCGAGGGGACGGGCTGCAGATTGTCGGCAAAATGCTTTCCGAGATGTCGAAGAAGTTCAGCATTCCGGTGGAGTTCAGCGGGGTATCAGTGTACGGGCCTCAGGTGAGGAGGGAGATGGTGGACGTCCGTCCGGGGGAGGCTCTGGCCGTGAATTTCACACTCCAGCTTCACCATACGCCGGACGAGAGTGTGGACGTGGGCAATCCTCGAGACGGGCTGCTGAGAATGGTGAAATCCCTATCGCCGAGAGTGGTGACGCTGGTAGAGCAGGAGTCGAACACGAACACAACCCCGTTTGTTATGAGGTTCGCGGAGACGCTGGATTACTACTCCGCCATGTTTGAGTCGATCGATGTGACGCTGCCGAGAGACAGCAAGGAGAGGATAAACGTGGAGCAGCACTGCCTGGCCAAGGACATTGTCAACATAATAGCTTGCGAGGGAAATGAGAGGGTGGAGAGGCATGAGCTGCTTGGAAAGTGGAGGTCTCGGCTAACTATGGCTGGGTTCAAGCCTTACCCGCTCAGCTCTTACGTCAATTCGGTCATTAAAACTCTTTTGGGGTATTACTCTGATAAGTATACGTTGGTGGAGAAGGATGGCGCGATGCTCCTCGGTTGGAAGAACAGGAATTTGATTTCTGCGTCCGCGTGGCGTTAGTTAATAATCTCTTCTTATTTTAATAAGCTTTTATTTTAACAAATATTTAAATTGTATGGCCGTTCTCATGTGCTTTGTGCCTTTTTCATCTCATAAAAACAGAAATTGTATTAGTCTGTTCAAAAAATGAGGATACGATTTTGTATGTGAATCTTACTGACAGGTATTTTATATCGAAGAAGCATTGTGCCAGCCCGCAGAGATAGGTAATCAATCCCAA

Network for GWHGAAEX000076

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03514.13	GRAS	121	492	5.60E-127

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GRAS

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	28.850
SRP064423	SRR2545915	Juvenile tuber	23.980
SRP108465	SRR5643513	five period of Gastrodia elata	48.100
	SRR5643514	five period of Gastrodia elata	49.130
	SRR5643515	five period of Gastrodia elata	47.520
	SRR5643524	five period of Gastrodia elata	51.550
	SRR5643525	five period of Gastrodia elata	61.590
	SRR5643528	five period of Gastrodia elata	51.170
	SRR5643658	five period of Gastrodia elata	63.170
	SRR5643659	five period of Gastrodia elata	42.750
	SRR5643660	five period of Gastrodia elata	47.440
	SRR5643661	five period of Gastrodia elata	46.800
	SRR5643662	five period of Gastrodia elata	50.320
	SRR5643663	five period of Gastrodia elata	44.350
	SRR5643664	five period of Gastrodia elata	50.450
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	45.860
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	39.480
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	44.570
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	44.450
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	44.370
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	43.840
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	42.110
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	41.200
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	42.250
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	43.550
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	53.980
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	53.980
SRP279888	Gastro	Gastrodia elata tuber	54.16
	Juven	Juvenile tuber	51.90
	Mother_Gastro	Mother tuber of Gastrodia elata	63.83
	Mother_Juven	Mother tuber of Juvenile	48.68