Detail information of GWHGAAEX000077/evm.TU.scaffold_0.139
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 2.00E-165 | FOG: PPR repeat |
| nr | gi|672139885|ref|XP_008793742.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial-like [Phoenix dactylifera] |
| Swissprot | tr|O81767|PP348_ARATH | 9.00E-168 | Pentatricopeptide repeat-containing protein At4g33990 |
| trEMBL | tr|M5WUT9|M5WUT9_PRUPE | 0 | Uncharacterized protein {ECO:0000313|EMBL:EMJ17577.1} |
| TAIR | AT2G29760 | 2.00E-165 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000014 | 8297917 | 8301063 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000077
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 114 | 142 | 0.00013 |
| PF01535.19 | PPR | 186 | 209 | 0.0033 |
| PF01535.19 | PPR | 215 | 242 | 5.80E-05 |
| PF01535.19 | PPR | 286 | 311 | 0.64 |
| PF13041.5 | PPR_2 | 313 | 359 | 8.00E-08 |
| PF01535.19 | PPR | 388 | 411 | 0.071 |
| PF13041.5 | PPR_2 | 414 | 460 | 6.20E-12 |
| PF01535.19 | PPR | 488 | 513 | 0.0053 |
| PF14432.5 | DYW_deaminase | 587 | 710 | 5.40E-44 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.850 |
| SRR2545915 | Juvenile tuber | 1.880 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.920 |
| SRR5643514 | five period of Gastrodia elata | 2.410 | |
| SRR5643515 | five period of Gastrodia elata | 2.080 | |
| SRR5643524 | five period of Gastrodia elata | 1.620 | |
| SRR5643525 | five period of Gastrodia elata | 0.930 | |
| SRR5643528 | five period of Gastrodia elata | 0.770 | |
| SRR5643658 | five period of Gastrodia elata | 0.720 | |
| SRR5643659 | five period of Gastrodia elata | 2.450 | |
| SRR5643660 | five period of Gastrodia elata | 2.090 | |
| SRR5643661 | five period of Gastrodia elata | 2.240 | |
| SRR5643662 | five period of Gastrodia elata | 2.900 | |
| SRR5643663 | five period of Gastrodia elata | 2.750 | |
| SRR5643664 | five period of Gastrodia elata | 1.990 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.900 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.930 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.800 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.870 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.630 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.580 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.430 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.040 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.690 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.010 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.400 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.400 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.23 |
| Juven | Juvenile tuber | 1.59 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.12 | |
| Mother_Juven | Mother tuber of Juvenile | 0.54 |