Gene detail

Detail information of GWHGAAEX000082/evm.TU.scaffold_0.148

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|720007158\|ref\|XP_010258215.1\|	2.36E-179	PREDICTED: probable WRKY transcription factor 3 isoform X1 [Nelumbo nucifera]
Swissprot	tr\|Q9ZQ70\|WRKY3_ARATH	2.00E-145	Probable WRKY transcription factor 3
trEMBL	tr\|A0A068TVV4\|A0A068TVV4_COFCA	5.00E-172	Coffea canephora
TAIR	AT2G03340	8.00E-145	WRKY DNA-binding protein 3

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000014	8726145	8737435	-

Transcript Sequence
>GWHTAAEX000082 ACGATGCATGATTTGTTCCTATCTTCCATGCACTGTTGGAGTCAACGATTTGCATTTGAGTTTAATTTAGAGATAATTTAGTGTCATACCAGCTCCTCCATCGATTCGCTCGCCTCGAGCTCCGTACTCATGCGCATCACTCTCGCTCAACAATAACACTTCCAAAAATACGGATCTCCAATAAAGAATTGCTTGAAAGATTGGGTTCTTCTCATTTTTTTGATCCCACAAAGTCCAATCAATGGCCGAAGATGGCGGCGGGAGGGCGTCGATTGCGTCGGCTGAAGGGGGCAAGCGGCCATCGATAACGTTACCGGCGAGGTCCTCTATTGAGAGCCTATTCCGTGTCGGAGTCTCGGCAGAGGCTAGTCCAGGTCCGATGACACTGGTTTCGAGATTTTTTGCCGAAGATTCGGAGCCAGAGTGTCGCTCTTTCTCGCAGCTACTGGCCGGAGCAATGGCCTCTCCGGCAGCCACACGGAAATTTCTGGCTGAAAAAGAGGATTCTGAGACTGCCGATGCGCGGGGAAGAGGAGAAGGGGCGAACTTGAATTTGGGGCATAACCGGCCGATGAACTTATTGGTCGCGCAGTCACCGTACTTCACTGTTCCGGCAGGGCTCAGCCCCGGCGGATTGCTCGATTCTCCCGCCATGTTCTGCTCTAATTTGGGACAGCTTGGAATGTCACATCAACAGGCCTTGGCACAAGTAACAGCACAAGCCACCAATTCTCATGCTCAAAATCTCAGCCAGGGAGAATATTCGTCTTCTCTTTCATCAGCCTCTGCCATTAACATGGAAGCAACCCTTCCTATGCAGCCCATTTCTTCCTGTACATATAGTTCTGAATCTTTTCCTATTGTTCACTGTGACCAAAGAACGCAACCAGCAGTCCTTGTTGTCGACAAACCAGTTGACGACGGCTACAACTGGCGCAAATATGGACAGAAACAGGTGAAGGGAAGTGAGTTTCCAAGGAGCTATTACAAATGCACTCACCCTAAATGTCCTGTTAAGAAGAAAGTCGAACGTTCTTTTGATGGCCATGTAACTGAGATAATTTACAAAGGGCAGCACAATCACCAGAGGCCTCCAGCTAATAAACGTTCAAAGGACAGTGCAGCTGAGTTGAATGAAAACTCTGATCATAATAATGCTGATTCATGCCTGTCAGGCGGCCTTTCAAACTCGAACTTATTATGTGAAGGCATGCTTGGTTTAGCTAGAAGAGACCGAGAATTCGGGCATGGAACATCGGAGCAATTATCAGGTTCTAGTCATGGCGAGGAGTTGGGTGATGCTGACACTGGCATAAATGAAGCTGAATATGGCAGCGATCCAGAACAAAAGAGAAGGAAACTAGAAACTACAGCGGTAGAGCCAGCTTCTCATAGGACGGTAACAGAACCAAGGATCATAGTGCAAACAACAAGTGAAGTTGACCTTTTGGACGATGGCTATAGGTGGCGCAAATATGGACAGAAGGTGGTAAAAGGAAATCCTTATCCGAGGAGTTATTACAAGTGCACTCATGCAGGGTGCAATGTTCGAAAGCATGTTGAAAGGGCTTCAAGTGACCCGAAGGCTGTCATAACAACTTATGAGGGGAAGCATAGCCATGATGTCCCTGCTGCAAGAAACAGCAGCCATAGCACTGGTGCGCCAGCCAATAGAAATAACTTTTCTGCTCCATCAGATTTCAGGCCAAATAATGTGGCCATCCGCGGGAGTACGAATGTACAACGGCCGGTTGCCATTCTTCGGCTGAAAGCGGAGCATGAAATGACACAAAACACTTGAAAATATTGTGTTATAAAGGTGAATCTTTTACTTGAATTCTGAATTAATAATCTTCATGTATGGATGTGTAATTTTGTTATTTTGCTTTTTTGTGCATTTTAGCACACAAATTGATAGTAAATTTGTATTTATGTAATTTGTAATTATGTGTTCATGTTGTATTTAGTATTATTATTGTTTTTTTTTGTCTTTAGCGAGTATAGCTTTGGTGTGGGAGTTTTGATAATTTCTGCTATAAAGCGTGTAAAAATACATAGAACTTTGTGATGACATTTCAATGTTTTGTAATTGACAGTTTCTATTCAAATAAACAATGTTGTTCTTCTTTGAGGGTCATTTCAATTGTGTTATCTTTTGCTAAATCATTAGGACTTTTTGAAGATTGTATTTAAAAAGGT

Network for GWHGAAEX000082

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03106.14	WRKY	226	282	2.60E-25
PF03106.14	WRKY	404	460	3.50E-26

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	34.330
SRP064423	SRR2545915	Juvenile tuber	28.090
SRP108465	SRR5643513	five period of Gastrodia elata	27.420
	SRR5643514	five period of Gastrodia elata	23.860
	SRR5643515	five period of Gastrodia elata	22.490
	SRR5643524	five period of Gastrodia elata	24.930
	SRR5643525	five period of Gastrodia elata	24.730
	SRR5643528	five period of Gastrodia elata	25.110
	SRR5643658	five period of Gastrodia elata	37.990
	SRR5643659	five period of Gastrodia elata	16.370
	SRR5643660	five period of Gastrodia elata	20.220
	SRR5643661	five period of Gastrodia elata	19.260
	SRR5643662	five period of Gastrodia elata	18.090
	SRR5643663	five period of Gastrodia elata	17.970
	SRR5643664	five period of Gastrodia elata	24.190
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	36.370
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	25.140
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	28.010
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	47.580
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	45.190
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	65.640
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	39.100
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	45.720
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	22.830
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	24.730
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	28.970
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	28.970
SRP279888	Gastro	Gastrodia elata tuber	31.09
	Juven	Juvenile tuber	34.63
	Mother_Gastro	Mother tuber of Gastrodia elata	40.25
	Mother_Juven	Mother tuber of Juvenile	47.34