Detail information of GWHGAAEX000097/evm.TU.scaffold_0.202
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|159901284|ref|YP_001547531.1| | 2.00E-73 | FAD linked oxidase domain-containing protein [Herpetosiphon aurantiacus DSM 785] |
| KOG | KOG1231 | 0 | Proteins containing the FAD binding domain |
| nr | gi|695022516|ref|XP_009398389.1| | 0 | PREDICTED: cytokinin dehydrogenase 5 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q5ZAY9|CKX5_ORYSJ | 0 | Cytokinin dehydrogenase 5 (Precursor) |
| trEMBL | tr|F6H1K3|F6H1K3_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB45984.1} |
| TAIR | AT1G75450 | 0 | cytokinin oxidase 5 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000014 | 13053584 | 13057856 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000097
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01565.22 | FAD_binding_4 | 62 | 204 | 2.40E-19 |
| PF09265.9 | Cytokin-bind | 236 | 516 | 5.00E-117 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00279 | CKX | Zeatin biosynthesis | map00908 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0009690 | Biological Process | cytokinin metabolic process |
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0016491 | Molecular Function | oxidoreductase activity |
| GO:0071949 | Molecular Function | FAD binding |
| GO:0019139 | Molecular Function | cytokinin dehydrogenase activity |
| GO:0050660 | Molecular Function | flavin adenine dinucleotide binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.620 |
| SRR2545915 | Juvenile tuber | 0.170 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.730 |
| SRR5643514 | five period of Gastrodia elata | 10.130 | |
| SRR5643515 | five period of Gastrodia elata | 3.740 | |
| SRR5643524 | five period of Gastrodia elata | 3.100 | |
| SRR5643525 | five period of Gastrodia elata | 0.720 | |
| SRR5643528 | five period of Gastrodia elata | 1.440 | |
| SRR5643658 | five period of Gastrodia elata | 1.390 | |
| SRR5643659 | five period of Gastrodia elata | 7.600 | |
| SRR5643660 | five period of Gastrodia elata | 3.670 | |
| SRR5643661 | five period of Gastrodia elata | 2.380 | |
| SRR5643662 | five period of Gastrodia elata | 0.630 | |
| SRR5643663 | five period of Gastrodia elata | 0.350 | |
| SRR5643664 | five period of Gastrodia elata | 0.390 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 26.130 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 26.240 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 17.800 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 16.070 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 16.830 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 11.230 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 17.900 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 12.400 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 14.330 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 19.830 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 39.850 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 39.850 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.22 |
| Juven | Juvenile tuber | 7.83 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.76 | |
| Mother_Juven | Mother tuber of Juvenile | 1.68 |