Detail information of GWHGAAEX000103/evm.TU.scaffold_0.212
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2341 | 8.00E-83 | TATA box binding protein (TBP)-associated factor, RNA polymerase II |
| nr | gi|743847496|ref|XP_010939118.1| | 5.96E-120 | PREDICTED: transcription initiation factor TFIID subunit 4b isoform X4 [Elaeis guineensis] |
| Swissprot | tr|F4K4L7|TAF4B_ARATH | 9.00E-83 | Transcription initiation factor TFIID subunit 4b |
| trEMBL | tr|M0SKQ5|M0SKQ5_MUSAM | 1.00E-107 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P03380_001} |
| TAIR | AT5G43130 | 8.00E-83 | TBP-associated factor 4 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000014 | 13702729 | 13715797 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000103
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF12174.7 | RST | 88 | 143 | 6.30E-12 |
| PF05236.13 | TAF4 | 454 | 742 | 1.40E-62 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03129 | TAF4 | Basal transcription factors | map03022 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006352 | Biological Process | DNA-templated transcription, initiation |
| GO:0005669 | Cellular Component | transcription factor TFIID complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.390 |
| SRR2545915 | Juvenile tuber | 2.940 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.810 |
| SRR5643514 | five period of Gastrodia elata | 3.020 | |
| SRR5643515 | five period of Gastrodia elata | 4.880 | |
| SRR5643524 | five period of Gastrodia elata | 2.800 | |
| SRR5643525 | five period of Gastrodia elata | 2.500 | |
| SRR5643528 | five period of Gastrodia elata | 4.220 | |
| SRR5643658 | five period of Gastrodia elata | 2.750 | |
| SRR5643659 | five period of Gastrodia elata | 3.000 | |
| SRR5643660 | five period of Gastrodia elata | 2.740 | |
| SRR5643661 | five period of Gastrodia elata | 3.800 | |
| SRR5643662 | five period of Gastrodia elata | 4.470 | |
| SRR5643663 | five period of Gastrodia elata | 3.500 | |
| SRR5643664 | five period of Gastrodia elata | 3.570 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.150 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.030 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.120 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.540 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.160 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.040 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.790 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.140 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.150 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.950 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.150 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.150 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.48 |
| Juven | Juvenile tuber | 1.97 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 34.19 | |
| Mother_Juven | Mother tuber of Juvenile | 4.81 |