Detail information of GWHGAAEX000115/evm.TU.scaffold_0.236
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|46447223|ref|YP_008588.1| | 8.00E-69 | isopentenyl monophosphate kinase (IPK) [Candidatus Protochlamydia amoebophila UWE25] |
| nr | gi|295812493|gb|ADG34843.1| | 0 | 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase [Vanda hybrid cultivar] |
| Swissprot | tr|P93841|ISPE_SOLLC | 8.00E-180 | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic/chromoplastic (Precursor; Fragment) |
| trEMBL | tr|D6PAX9|D6PAX9_9ASPA | 0 | 4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000313|EMBL:ADG34843.1} |
| TAIR | AT2G26930 | 9.00E-169 | 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000014 | 14843864 | 14896159 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000115
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00288.25 | GHMP_kinases_N | 154 | 192 | 1.40E-06 |
| PF08544.12 | GHMP_kinases_C | 279 | 330 | 0.00011 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00919 | ispE | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Biosynthesis of antibiotics | map01130 | ||
| Terpenoid backbone biosynthesis | map00900 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016114 | Biological Process | terpenoid biosynthetic process |
| GO:0050515 | Molecular Function | 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 13.750 |
| SRR2545915 | Juvenile tuber | 16.120 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 18.640 |
| SRR5643514 | five period of Gastrodia elata | 21.380 | |
| SRR5643515 | five period of Gastrodia elata | 19.850 | |
| SRR5643524 | five period of Gastrodia elata | 21.190 | |
| SRR5643525 | five period of Gastrodia elata | 17.110 | |
| SRR5643528 | five period of Gastrodia elata | 21.200 | |
| SRR5643658 | five period of Gastrodia elata | 16.100 | |
| SRR5643659 | five period of Gastrodia elata | 16.030 | |
| SRR5643660 | five period of Gastrodia elata | 13.430 | |
| SRR5643661 | five period of Gastrodia elata | 16.130 | |
| SRR5643662 | five period of Gastrodia elata | 15.040 | |
| SRR5643663 | five period of Gastrodia elata | 17.890 | |
| SRR5643664 | five period of Gastrodia elata | 13.270 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 13.010 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 12.680 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 15.830 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 12.330 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 12.810 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 12.230 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 12.350 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 13.720 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 19.910 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 15.160 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 20.370 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 20.370 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 13.72 |
| Juven | Juvenile tuber | 14.81 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 12.05 | |
| Mother_Juven | Mother tuber of Juvenile | 12.60 |