Detail information of GWHGAAEX000117/evm.TU.scaffold_0.239


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG16593.00E-41Class 2 transcription repressor NC2, alpha subunit (DRAP1)
nrgi|225435941|ref|XP_002268866.1|2.58E-56PREDICTED: dr1-associated corepressor isoform X2 [Vitis vinifera]
Swissprottr|Q9ZVL3|NFYC3_ARATH2.00E-09Nuclear transcription factor Y subunit C-3
trEMBLtr|D7T1D7|D7T1D7_VITVI1.00E-56Putative uncharacterized protein {ECO:0000313|EMBL:CBI24317.3}
TAIRAT3G124803.00E-41nuclear factor Y, subunit C11

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000141494543514971593-
Transcript Sequence

Network for GWHGAAEX000117

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00808.22CBFD_NFYB_HMF8712.20E-18
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyNF-YC

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0046982Molecular Functionprotein heterodimerization activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms27.230
SRR2545915Juvenile tuber27.420
SRP108465SRR5643513five period of Gastrodia elata9.430
SRR5643514five period of Gastrodia elata11.160
SRR5643515five period of Gastrodia elata12.470
SRR5643524five period of Gastrodia elata13.980
SRR5643525five period of Gastrodia elata16.270
SRR5643528five period of Gastrodia elata15.150
SRR5643658five period of Gastrodia elata13.270
SRR5643659five period of Gastrodia elata13.120
SRR5643660five period of Gastrodia elata12.600
SRR5643661five period of Gastrodia elata11.210
SRR5643662five period of Gastrodia elata13.300
SRR5643663five period of Gastrodia elata13.190
SRR5643664five period of Gastrodia elata14.690
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_19.850
SRR6049655Rhizomagastrodiae_C368-T10_good_110.290
SRR6049656Rhizomagastrodiae_C368-T07_good_17.300
SRR6049657Rhizomagastrodiae_C368-T07_good_112.070
SRR6049658Rhizomagastrodiae_C368-T04_good_16.060
SRR6049659Rhizomagastrodiae_C368-T04_good_15.620
SRR6049660Rhizomagastrodiae_C368-T01_good_16.930
SRR6049661Rhizomagastrodiae_C368-T04_good_17.050
SRR6049662Rhizomagastrodiae_C368-T01_good_17.960
SRR6049663Rhizomagastrodiae_C368-T01_good_16.180
SRR6049664Rhizomagastrodiae_C368-T10_good_17.530
SRR6049665Rhizomagastrodiae_C368-T10_good_17.530
SRP279888GastroGastrodia elata tuber 16.02
JuvenJuvenile tuber8.33
Mother_GastroMother tuber of Gastrodia elata 22.05
Mother_JuvenMother tuber of Juvenile 15.39