Gene detail

Detail information of GWHGAAEX000127/evm.TU.scaffold_0.257_evm.TU.scaffold_0.258

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|158318503\|ref\|YP_001511011.1\|	3.00E-32	WD-40 repeat-containing serine/threonin protein kinase [Frankia sp. EAN1pec]
KOG	KOG0598	0	Ribosomal protein S6 kinase and related proteins
nr	gi\|743843319\|ref\|XP_010938032.1\|	0	PREDICTED: serine/threonine-protein kinase AtPK2/AtPK19-like [Elaeis guineensis]
Swissprot	tr\|Q39030\|KPK2_ARATH	0	Serine/threonine-protein kinase AtPK2/AtPK19
trEMBL	tr\|I1PB18\|I1PB18_ORYGL	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:ORGLA03G0156400.1}
TAIR	AT3G08720	0	serine/threonine protein kinase 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000014	15442674	15452864	+

Transcript Sequence
>GWHTAAEX000127 GGACGGTAGGAAAGCAGCTTGGATTGACCGCATTGTGTTAGTGGACACTTTTATCTCTCCACCGATTGTGCCCCGGTCTTTATTACAGGTGGCATTGCCCGTCGCTATATAAGATCGCAAAAACGTTCCAGCCCTAAACCGGATTCCTACGATCAAATCGTCGTTCCCCTCTTCAAGCTTGGGACAACGTAATATTCATGAGTTCCAGACATAGAGTGTCGTCTGCTGTTTCCTGTACAACGGGAAAGAACAGCTTTGGAGTTTTGGCCGGTCTTCTCCCAGGCTTCTTGGGATCTCCCATTGTTTGTGTAGATTTCCTCTTGTTCAAGGCCACAGTTAGAAACCCATCACCATCTTTTTCCCTTAGTATTTGTGGTGGGTTTTTGCCTTAGAAGGTTTAATAATTGCAGTCAGATTGCCATCTTTAGAGCAGCCTAACTGATGGTTTCCTCCAGCGTATCATTTCTGACCAAGACAAGCAGACACATACTTCTACCAATGGGCCCACCTGATACTATTCCTTCTGACCAGGAGGAATTTGATTTTTCCGATGTTTTTGGTCCTGCTCCGTCCCAAACCTTGATTGATGTTGATCTGTTGTCAACAGATAATTCAGTTCCACAATCAGCCTCAGATAGCAAATTTCATGTTGCCCCACTTGTCATCCACAACCGTTCACACTCTTTGGTGGGCCCTTCTCCTCGCATTACCCAATTTTCACAACTCGCTAAACTTACCATACATGAGACTGAGAGCTCTTTGGAGATTGTAGAATGCTCCTTGGATGAGATTGAACTTCATCATGATAAATCATCTACCGGTGGTCCTGAAAAGAATGATATTACAGTTGAGGAATTTCCGAGTGTGAGGCTTGAAGATTTTGATGTCTTAAAAGTTGTTGGGCAGGGTGCTTTCGGGAAAGTTTTTCAGGTGAAGAGAAAAGGAACTTCAGAAATTTTTGCAATGAAGGTTATGAGAAAAGATAAGATAATGGAGAAGAATCATGCTGAGTACATGAAAGCTGAAAGAGACATATTGACAAAAGTTAACCATCCTTTCATCGTTCAGCTTAGATACTCCTTTCAGACAAAATACAGGCTATACCTGGTCTTAGAATTCGTGAATGGGGGACACTTGTTCTTTCAGCTCTATCATCAAGGCTTATTCAGAGAGGATCTCGCATGCATATATACTGCTGAAATAGTCTCTGCGGTCTCCCATCTTCATGCAAATGGAATAATGCACAGAGATCTTAAGCCTGAGAACATCCTTTTGGATGCTGATGGCCACGTTATGTTGACTGATTTTGGGCTGGCCAAGGAATTCGATGAGAACACTAGATCCAACTCAATGTGCGGAACTGTGGAGTACATGGCGCCGGAAATCATTCTTGGGAAAGGCCATGACCAGGCTGCTGACTGGTGGAGCGTCGGAATCCTTGTATTTGAGATGCTCACTGGCAAGCCTCCATTTGTTGGAGGTAACAACAGGGGCAGGATTCAGCAGAGAATAGTGAAGGATAAGATAAAGCTGCCGGCCTTCTTAACCTGCGAAGCCCACTCCCTGTTAAAAGGGCTGCTGCAAAAGGAAGCGAACAAGCGGCTCGGCTGCGGGCCGGACGGGAGCGAGGAGATCAAGAGACACCGCTGGTTCAGGTCGATCAACTGGAAGAAACTCGACTCGAGGGAAGTACAGCCAGGCTTCCGTCCTAACGTCGCCGGAAAGCTGTGCATCGCCAATTTCGACGAGAGGTGGACAAGCATGTCGGTGCTCGACTCTCCTATTGCCAGTCCTGTTTCCGGTGACTGCGATTTCGCCGGCTTTACGTTTGCAAGATCGCCGGCTTTAGTCCAGATGCCCAGCCCTCTGCAGCCCAAGTCATCTTCTTCTACATGAATGGCCAAAACTATTTGCATTGTAAATCCTCAATCCTAACATTTTTTATAATACTAGTGTTTGAATGTCTTGGGCAAGTTTTTACTTTGTGGCTTGTGAGAAAGCACACTTTTGCTATTTCCATTTATCAACTGCCTAAAGATTTGCAGTGTTTAATTCCTAATATTTGATTATATTTTCATAATTTTATGTTACCCGGTGGTGACTTGGTGGGGTGAAGATGAAGATTGTGTGCACAGGCTATCGTTCACTTGGTAACGTGTTTGGTTGATCGAATGGACTTGGAATGACTTGAACTTTTATGTATATTGGGATGTTAGAAATTTAGGAAGTATTTTCTTAGGTTTTTTATCCATTGTTTGAGAAGGTTATGGACAGTGAAGGCTTCGTTGGGAGAGTGTTTGGTTGTTGAAATGAAAGTATGTTTTAGTATATTTTGGTGAAATAAAATGAAGATAAAACAAAAAAAATATGTTGATCTTTTTGTATTATAAAATGTTAAGATCTTTTTTATTAATAGAATTTCCC

Network for GWHGAAEX000127

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.24	Pkinase	148	404	3.10E-73
PF00433.23	Pkinase_C	425	463	0.00023

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	AGC-Pl

KEGG pathway

KO	Enzyme	pathway	mapID
K04688	RPS6KB	ErbB signaling pathway	map04012
		TGF-beta signaling pathway	map04350
		Apelin signaling pathway	map04371
		HIF-1 signaling pathway	map04066
		PI3K-Akt signaling pathway	map04151
		AMPK signaling pathway	map04152
		mTOR signaling pathway	map04150
		Autophagy - animal	map04140
		Fc gamma R-mediated phagocytosis	map04666
		Insulin signaling pathway	map04910
		Axon regeneration	map04361
		Longevity regulating pathway	map04211
		Longevity regulating pathway - worm	map04212
		Longevity regulating pathway - multiple species	map04213
		Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0004674	Molecular Function	protein serine/threonine kinase activity
GO:0005524	Molecular Function	ATP binding
GO:0004672	Molecular Function	protein kinase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	51.650
SRP064423	SRR2545915	Juvenile tuber	46.370
SRP108465	SRR5643513	five period of Gastrodia elata	33.420
	SRR5643514	five period of Gastrodia elata	34.810
	SRR5643515	five period of Gastrodia elata	45.410
	SRR5643524	five period of Gastrodia elata	35.510
	SRR5643525	five period of Gastrodia elata	66.080
	SRR5643528	five period of Gastrodia elata	101.560
	SRR5643658	five period of Gastrodia elata	62.160
	SRR5643659	five period of Gastrodia elata	39.500
	SRR5643660	five period of Gastrodia elata	40.500
	SRR5643661	five period of Gastrodia elata	42.680
	SRR5643662	five period of Gastrodia elata	58.490
	SRR5643663	five period of Gastrodia elata	46.630
	SRR5643664	five period of Gastrodia elata	54.060
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	57.900
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	51.570
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	48.900
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	43.590
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	50.800
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	53.330
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	52.530
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	53.290
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	65.670
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	67.160
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	56.370
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	56.370
SRP279888	Gastro	Gastrodia elata tuber	58.16
	Juven	Juvenile tuber	30.49
	Mother_Gastro	Mother tuber of Gastrodia elata	89.41
	Mother_Juven	Mother tuber of Juvenile	57.37