Detail information of GWHGAAEX000131/evm.TU.scaffold_0.262
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|153009316|ref|YP_001370531.1| | 2.00E-83 | recombinase A [Ochrobactrum anthropi ATCC 49188] |
| KOG | KOG1433 | 2.00E-121 | DNA repair protein RAD51/RHP55 |
| nr | gi|743875109|ref|XP_010907253.1| | 1.08E-149 | PREDICTED: DNA repair protein recA homolog 2, mitochondrial-like isoform X2 [Elaeis guineensis] |
| Swissprot | tr|Q8RY99|RECAM_ARATH | 1.00E-122 | DNA repair protein recA homolog 2, mitochondrial (Precursor) |
| trEMBL | tr|D7TSA5|D7TSA5_VITVI | 2.00E-132 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI33377.3} |
| TAIR | AT3G10140 | 2.00E-121 | RECA homolog 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000014 | 15583297 | 15625231 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000131
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00154.20 | RecA | 85 | 345 | 3.30E-83 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006259 | Biological Process | DNA metabolic process |
| GO:0006281 | Biological Process | DNA repair |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003697 | Molecular Function | single-stranded DNA binding |
| GO:0008094 | Molecular Function | DNA-dependent ATPase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5.110 |
| SRR2545915 | Juvenile tuber | 6.110 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.280 |
| SRR5643514 | five period of Gastrodia elata | 6.080 | |
| SRR5643515 | five period of Gastrodia elata | 6.060 | |
| SRR5643524 | five period of Gastrodia elata | 5.860 | |
| SRR5643525 | five period of Gastrodia elata | 3.160 | |
| SRR5643528 | five period of Gastrodia elata | 4.030 | |
| SRR5643658 | five period of Gastrodia elata | 2.930 | |
| SRR5643659 | five period of Gastrodia elata | 8.330 | |
| SRR5643660 | five period of Gastrodia elata | 6.800 | |
| SRR5643661 | five period of Gastrodia elata | 7.300 | |
| SRR5643662 | five period of Gastrodia elata | 7.340 | |
| SRR5643663 | five period of Gastrodia elata | 6.030 | |
| SRR5643664 | five period of Gastrodia elata | 5.130 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.450 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.480 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.290 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.660 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.710 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.690 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 5.340 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.650 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.920 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.380 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.280 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.280 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 6.48 |
| Juven | Juvenile tuber | 5.89 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 5.50 | |
| Mother_Juven | Mother tuber of Juvenile | 7.67 |