Detail information of GWHGAAEX000134/evm.TU.scaffold_0.269


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG41971.00E-81FOG: PPR repeat
nrgi|743862200|ref|XP_010943475.1|4.26E-163PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Elaeis guineensis]
Swissprottr|A8MQA3|PP330_ARATH2.00E-82Pentatricopeptide repeat-containing protein At4g21065
trEMBLtr|M0TQ19|M0TQ19_MUSAM1.00E-140Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P13160_001}
TAIRAT4G21070_11.00E-81Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000141589528815897092-
Transcript Sequence

Network for GWHGAAEX000134

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01535.19PPR1481720.0033
PF01535.19PPR2783040.031
PF01535.19PPR3153410.06
PF01535.19PPR3473710.092
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms0.520
SRR2545915Juvenile tuber0.430
SRP108465SRR5643513five period of Gastrodia elata1.730
SRR5643514five period of Gastrodia elata1.590
SRR5643515five period of Gastrodia elata1.320
SRR5643524five period of Gastrodia elata1.140
SRR5643525five period of Gastrodia elata0.260
SRR5643528five period of Gastrodia elata0.090
SRR5643658five period of Gastrodia elata0.070
SRR5643659five period of Gastrodia elata0.870
SRR5643660five period of Gastrodia elata0.670
SRR5643661five period of Gastrodia elata1.080
SRR5643662five period of Gastrodia elata0.870
SRR5643663five period of Gastrodia elata0.570
SRR5643664five period of Gastrodia elata1.170
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_11.700
SRR6049655Rhizomagastrodiae_C368-T10_good_11.350
SRR6049656Rhizomagastrodiae_C368-T07_good_11.400
SRR6049657Rhizomagastrodiae_C368-T07_good_10.940
SRR6049658Rhizomagastrodiae_C368-T04_good_12.470
SRR6049659Rhizomagastrodiae_C368-T04_good_10.700
SRR6049660Rhizomagastrodiae_C368-T01_good_11.060
SRR6049661Rhizomagastrodiae_C368-T04_good_11.770
SRR6049662Rhizomagastrodiae_C368-T01_good_12.510
SRR6049663Rhizomagastrodiae_C368-T01_good_12.010
SRR6049664Rhizomagastrodiae_C368-T10_good_11.800
SRR6049665Rhizomagastrodiae_C368-T10_good_11.800
SRP279888GastroGastrodia elata tuber 0.85
JuvenJuvenile tuber0.33
Mother_GastroMother tuber of Gastrodia elata 0.59
Mother_JuvenMother tuber of Juvenile 0.65