Gene detail

Database	Orthologs	E value	Annotation
KOG	KOG0800	5.00E-83	FOG: Predicted E3 ubiquitin ligase
nr	gi\|672126840\|ref\|XP_008786879.1\|	5.78E-108	PREDICTED: E3 ubiquitin-protein ligase RING1-like [Phoenix dactylifera]
Swissprot	tr\|P0CH30\|RING1_GOSHI	1.00E-40	E3 ubiquitin-protein ligase RING1
trEMBL	tr\|Q10LG3\|Q10LG3_ORYSJ	1.00E-102	cDNA clone:J023049J20, full insert sequence {ECO:0000313\|EMBL:BAG91984.1}
TAIR	AT2G40830	5.00E-83	RING-H2 finger C1A

Scaffold	Start	End	Strand
GWHAAEX00000014	16022132	16022920	-

Transcript Sequence
>GWHTAAEX000138 ATGGCAAGTATTAGGAATACACATTGGTGCTACAGATGCGTGCAGGCTGTGAGACCTCGTGGACAGGGCATGCTTTGCCCCAACTGTAATGGAGGCTTTGTTCAAGAGCTTGATGACATGGGAGGCATTATGAATGCCTTTTCTGAAATAGAACCCGATGAATATCATGACAATAGGTATGACCTAATGAATGCCCTTGCTTCTATGATGAGGCAAAGAGTAGCAGAAAGGGATCTCGGCTATGGTTTTCAGCCCAGCCCATTGCTGATGTTTCGAGGCCAAGTTCCCGAGGATAGAGGGTTTGAAATCATCTTCCATGGTGGTCCCGGTGTAGGGATTCGTCGTGCCAACATTGCAGACTATTTTGTGGGCCCAGGGCTAAATGAATTGTTTGAACAGTTAACTCAAAGTGAAAGACGTGGACCTCCACCAGCTTCAAGATCATCGATTGATTCGATGCCAACGGTCAAAATTAGCCATAGGCATCTTCGTGGTGATTCTCATTGTCCCGTGTGCAAGGATAAGTTTGAATTGGGATCCGAAGCACGGGAGATGCCATGTAAGCATTTGTATCACCCAGATTGCATCATTCCTTGGTTAACACAGCACAATTCTTGCCCAGTTTGTCGGCAAGAGTTGCCGCCTCGTGGCTCTAATGAAGCTGAATGGCAAAGAGGAAGTACTAGTGATTCAAGTGATAGGGCGAATGAGGGGAGGAATCAAGGTAGAAGAAATCCTTTCTCATATTTTTGGCCTTTCCGCTCTTCAAACCCTGATGCGAGTTCATAA

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Module ID	Function Annotation

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14369.5	zinc_ribbon_9	6	37	2.70E-10
PF13639.5	zf-RING_2	168	210	4.70E-11

Protein Sequence

Gene family	subfamily
Ubiquitin Family	RING

KO	Enzyme	pathway	mapID
--	--	--	--

GO term	Ontology	Name
GO:0061630	Molecular Function	ubiquitin protein ligase activity

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	56.780
SRP064423	SRR2545915	Juvenile tuber	56.190
SRP108465	SRR5643513	five period of Gastrodia elata	47.950
	SRR5643514	five period of Gastrodia elata	43.010
	SRR5643515	five period of Gastrodia elata	59.150
	SRR5643524	five period of Gastrodia elata	45.320
	SRR5643525	five period of Gastrodia elata	58.820
	SRR5643528	five period of Gastrodia elata	61.350
	SRR5643658	five period of Gastrodia elata	51.900
	SRR5643659	five period of Gastrodia elata	63.310
	SRR5643660	five period of Gastrodia elata	60.080
	SRR5643661	five period of Gastrodia elata	64.100
	SRR5643662	five period of Gastrodia elata	72.520
	SRR5643663	five period of Gastrodia elata	73.270
	SRR5643664	five period of Gastrodia elata	72.760
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	60.630
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	45.170
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	63.460
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	62.850
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	62.540
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	71.470
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	61.110
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	65.340
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	53.820
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	54.370
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	62.640
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	62.640
SRP279888	Gastro	Gastrodia elata tuber	69.81
	Juven	Juvenile tuber	54.94
	Mother_Gastro	Mother tuber of Gastrodia elata	70.25
	Mother_Juven	Mother tuber of Juvenile	68.30