Detail information of GWHGAAEX000147/evm.TU.scaffold_0.286
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|46445775|ref|YP_007140.1| | 2.00E-40 | hypothetical protein pc0141 [Candidatus Protochlamydia amoebophila UWE25] |
| KOG | KOG2506 | 4.00E-88 | SpoU rRNA Methylase family protein |
| nr | gi|672145439|ref|XP_008796636.1| | 1.15E-126 | PREDICTED: uncharacterized protein LOC103712039 [Phoenix dactylifera] |
| trEMBL | tr|M0SYN8|M0SYN8_MUSAM | 3.00E-114 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P15090_001} |
| TAIR | AT4G38020 | 4.00E-88 | tRNA/rRNA methyltransferase (SpoU) family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000014 | 16349207 | 16385643 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000147
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00588.18 | SpoU_methylase | 174 | 323 | 1.10E-27 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006396 | Biological Process | RNA processing |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0008173 | Molecular Function | RNA methyltransferase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.390 |
| SRR2545915 | Juvenile tuber | 2.310 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.500 |
| SRR5643514 | five period of Gastrodia elata | 1.560 | |
| SRR5643515 | five period of Gastrodia elata | 1.160 | |
| SRR5643524 | five period of Gastrodia elata | 1.580 | |
| SRR5643525 | five period of Gastrodia elata | 1.960 | |
| SRR5643528 | five period of Gastrodia elata | 1.680 | |
| SRR5643658 | five period of Gastrodia elata | 1.650 | |
| SRR5643659 | five period of Gastrodia elata | 2.030 | |
| SRR5643660 | five period of Gastrodia elata | 1.780 | |
| SRR5643661 | five period of Gastrodia elata | 2.480 | |
| SRR5643662 | five period of Gastrodia elata | 2.080 | |
| SRR5643663 | five period of Gastrodia elata | 2.210 | |
| SRR5643664 | five period of Gastrodia elata | 1.920 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.960 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.780 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.650 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.830 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.070 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.680 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.740 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.370 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.320 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.130 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.200 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.200 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.53 |
| Juven | Juvenile tuber | 4.17 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.19 | |
| Mother_Juven | Mother tuber of Juvenile | 2.76 |