Detail information of GWHGAAEX000148/evm.TU.scaffold_0.288
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|220919241|ref|YP_002494545.1| | 3.00E-32 | amino acid/peptide transporter [Anaeromyxobacter dehalogenans 2CP-1] |
| KOG | KOG1237 | 0 | H+/oligopeptide symporter |
| nr | gi|695041707|ref|XP_009408470.1| | 0 | PREDICTED: protein NRT1/ PTR FAMILY 2.13-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q8RX77|PTR21_ARATH | 0 | Protein NRT1/ PTR FAMILY 2.13 |
| trEMBL | tr|J3L719|J3L719_ORYBR | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:OB01G50250.1} |
| TAIR | AT1G69870 | 0 | nitrate transporter 1.7 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000014 | 16468820 | 16476268 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000148
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module7 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00854.20 | PTR2 | 113 | 551 | 3.10E-81 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0022857 | Molecular Function | transmembrane transporter activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.820 |
| SRR2545915 | Juvenile tuber | 0.770 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.270 |
| SRR5643514 | five period of Gastrodia elata | 9.970 | |
| SRR5643515 | five period of Gastrodia elata | 6.290 | |
| SRR5643524 | five period of Gastrodia elata | 12.170 | |
| SRR5643525 | five period of Gastrodia elata | 0.850 | |
| SRR5643528 | five period of Gastrodia elata | 0.880 | |
| SRR5643658 | five period of Gastrodia elata | 1.600 | |
| SRR5643659 | five period of Gastrodia elata | 9.130 | |
| SRR5643660 | five period of Gastrodia elata | 8.220 | |
| SRR5643661 | five period of Gastrodia elata | 8.470 | |
| SRR5643662 | five period of Gastrodia elata | 4.490 | |
| SRR5643663 | five period of Gastrodia elata | 3.130 | |
| SRR5643664 | five period of Gastrodia elata | 3.210 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 10.550 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 8.120 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 12.640 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 10.210 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 10.840 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 13.520 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 16.340 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 10.470 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 14.830 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 15.310 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 13.820 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 13.820 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.79 |
| Juven | Juvenile tuber | 14.89 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.15 | |
| Mother_Juven | Mother tuber of Juvenile | 11.46 |