Detail information of GWHGAAEX000153/evm.TU.scaffold_0.295
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|337749490|ref|YP_004643652.1| | 3.00E-42 | chalcone and stilbene synthase domain-containing protein [Paenibacillus mucilaginosus KNP414] |
| nr | gi|406781243|gb|AFS60082.1| | 1.39E-174 | chalcone synthase [Paphiopedilum concolor] |
| Swissprot | tr|P53416|BBS_PHASS | 9.00E-163 | Bibenzyl synthase |
| trEMBL | tr|T1Q041|T1Q041_9ASPA | 5.00E-175 | Chalcone synthase {ECO:0000313|EMBL:AFS60082.1} |
| TAIR | AT5G13930 | 1.00E-153 | Chalcone and stilbene synthase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000014 | 16758055 | 16759724 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000153
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module7 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00195.18 | Chal_sti_synt_N | 4 | 224 | 1.50E-80 |
| PF02797.14 | Chal_sti_synt_C | 238 | 385 | 1.70E-57 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00660 | CHS | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Flavonoid biosynthesis | map00941 | ||
| Circadian rhythm - plant | map04712 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0009058 | Biological Process | biosynthetic process |
| GO:0016747 | Molecular Function | transferase activity, transferring acyl groups other than amino-acyl groups |
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.220 |
| SRR2545915 | Juvenile tuber | 3.050 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 35.250 |
| SRR5643514 | five period of Gastrodia elata | 76.090 | |
| SRR5643515 | five period of Gastrodia elata | 29.440 | |
| SRR5643524 | five period of Gastrodia elata | 64.230 | |
| SRR5643525 | five period of Gastrodia elata | 0.190 | |
| SRR5643528 | five period of Gastrodia elata | 0.710 | |
| SRR5643658 | five period of Gastrodia elata | 0.150 | |
| SRR5643659 | five period of Gastrodia elata | 72.090 | |
| SRR5643660 | five period of Gastrodia elata | 73.470 | |
| SRR5643661 | five period of Gastrodia elata | 70.410 | |
| SRR5643662 | five period of Gastrodia elata | 51.590 | |
| SRR5643663 | five period of Gastrodia elata | 13.740 | |
| SRR5643664 | five period of Gastrodia elata | 21.920 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 104.140 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 155.110 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 244.540 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 112.380 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 128.150 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 86.280 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 165.680 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 136.800 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 207.480 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 198.850 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 126.250 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 126.250 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 57.01 |
| Juven | Juvenile tuber | 703.52 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 15.00 | |
| Mother_Juven | Mother tuber of Juvenile | 136.96 |