Detail information of GWHGAAEX000156/evm.TU.scaffold_0.302
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|146298365|ref|YP_001192956.1| | 1.00E-43 | two component regulator [Flavobacterium johnsoniae UW101] |
| nr | gi|743782663|ref|XP_010921201.1| | 0 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840 [Elaeis guineensis] |
| Swissprot | tr|C0LGD7|Y1684_ARATH | 0 | Probable LRR receptor-like serine/threonine-protein kinase At1g06840 (Precursor) |
| trEMBL | tr|M0TC35|M0TC35_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P32410_001} |
| TAIR | AT1G06840 | 0 | Leucine-rich repeat protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000014 | 17012858 | 17065927 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000156
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 31 | 69 | 4.20E-08 |
| PF13855.5 | LRR_8 | 271 | 330 | 4.90E-08 |
| PF00069.24 | Pkinase | 618 | 883 | 2.60E-46 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-VIII-1 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005515 | Molecular Function | protein binding |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 45.750 |
| SRR2545915 | Juvenile tuber | 34.950 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 26.660 |
| SRR5643514 | five period of Gastrodia elata | 22.420 | |
| SRR5643515 | five period of Gastrodia elata | 27.540 | |
| SRR5643524 | five period of Gastrodia elata | 28.530 | |
| SRR5643525 | five period of Gastrodia elata | 26.740 | |
| SRR5643528 | five period of Gastrodia elata | 28.620 | |
| SRR5643658 | five period of Gastrodia elata | 27.270 | |
| SRR5643659 | five period of Gastrodia elata | 20.280 | |
| SRR5643660 | five period of Gastrodia elata | 22.080 | |
| SRR5643661 | five period of Gastrodia elata | 22.220 | |
| SRR5643662 | five period of Gastrodia elata | 21.600 | |
| SRR5643663 | five period of Gastrodia elata | 20.540 | |
| SRR5643664 | five period of Gastrodia elata | 18.810 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 23.360 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 28.300 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 21.790 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 26.240 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 34.860 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 42.630 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 27.070 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 34.610 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 25.950 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 28.940 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 24.520 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 24.520 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 32.56 |
| Juven | Juvenile tuber | 30.38 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 112.50 | |
| Mother_Juven | Mother tuber of Juvenile | 126.09 |